Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH11_RS14525 Genome accession   NZ_CP034018
Coordinates   2106608..2107258 (-) Length   216 a.a.
NCBI ID   WP_082298951.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2101608..2112258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH11_RS12455 (EGH11_12455) - 2101670..2102170 (-) 501 Protein_2131 pilin -
  EGH11_RS14520 (EGH11_12475) - 2102985..2103091 (-) 107 Protein_2132 pilin -
  EGH11_RS12485 (EGH11_12485) lpxC 2103219..2104142 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH11_RS12495 (EGH11_12495) pilE 2104681..2104980 (-) 300 WP_115306942.1 pilin Machinery gene
  EGH11_RS12500 (EGH11_12500) - 2105037..2105411 (-) 375 Protein_2135 pilin -
  EGH11_RS12510 (EGH11_12510) - 2105854..2106204 (-) 351 Protein_2136 pilin -
  EGH11_RS12515 (EGH11_12515) - 2106231..2106581 (-) 351 Protein_2137 pilin -
  EGH11_RS14525 (EGH11_12520) pilE 2106608..2107258 (-) 651 WP_082298951.1 pilin Machinery gene
  EGH11_RS12525 (EGH11_12525) - 2107374..2107746 (-) 373 Protein_2139 pilin -
  EGH11_RS12535 (EGH11_12535) - 2107881..2108227 (-) 347 Protein_2140 pilin -
  EGH11_RS12540 (EGH11_12540) - 2108248..2108607 (-) 360 Protein_2141 pilin -
  EGH11_RS12555 (EGH11_12555) - 2109406..2109531 (+) 126 Protein_2142 IS110 family transposase -
  EGH11_RS12570 (EGH11_12570) - 2110080..2110769 (-) 690 WP_050157270.1 M48 family metallopeptidase -
  EGH11_RS12575 (EGH11_12575) - 2110766..2111509 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  EGH11_RS12580 (EGH11_12580) gmhB 2111539..2112102 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23456.36 Da        Isoelectric Point: 9.6730

>NTDB_id=287079 EGH11_RS14525 WP_082298951.1 2106608..2107258(-) (pilE) [Neisseria gonorrhoeae strain FQ82]
MASPASNIKGKYVQKVEVNNGVVTATMASSNVNKEIKDKKLSLWAKREDGSVKWFCGQPVTRANADAAKDDVNAAKDTNK
IETKHLPSTCRDESSAGCTKTPEYYLNNGEWPKDNTSAGVASSAEIKGKYVQKVEVAKGVVTATMKSDGVNKEIKGKKLS
LWGRREDGSVKWFCGQPVKRDNAKADNDDVKADAADKDKIETKHLPSTCRDTSSAK

Nucleotide


Download         Length: 651 bp        

>NTDB_id=287079 EGH11_RS14525 WP_082298951.1 2106608..2107258(-) (pilE) [Neisseria gonorrhoeae strain FQ82]
GTGGCATCCCCCGCCTCCAACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAAT
GGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCGCCAACGCCGACGCCGCCAAAGACGACGTCAACGCCGCCAAAGACACCAACAAA
ATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCACAAAAACACCCGAATATTACCTGAA
TAACGGCGAATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCTCCGCCGAAATCAAAGGCAAATATGTTCAGAAAG
TTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCC
CTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAAAGCCGACAA
CGACGACGTCAAAGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGATACGTCAT
CTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(5-91)

Pilin (bacterial filament) (Pilin)

(99-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.221

52.315

0.394
  pilE Neisseria gonorrhoeae MS11

72.566

52.315

0.38