Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY87_RS15280 Genome accession   NZ_CP028741
Coordinates   3049157..3049786 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A34     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044157..3054786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY87_RS15265 (AOY87_16055) helD 3044399..3046453 (-) 2055 WP_240765486.1 DNA helicase IV -
  AOY87_RS15270 (AOY87_16060) yccF 3046576..3047022 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AOY87_RS15275 (AOY87_16065) yccS 3047032..3049194 (+) 2163 WP_240765488.1 YccS family putative transporter -
  AOY87_RS15280 (AOY87_16070) sxy/tfoX 3049157..3049786 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY87_RS15285 (AOY87_16075) sulA 3050005..3050514 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY87_RS15290 (AOY87_16085) ompA 3050871..3051911 (+) 1041 WP_000750416.1 porin OmpA -
  AOY87_RS15295 (AOY87_16090) matP 3051987..3052439 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AOY87_RS15300 (AOY87_16095) ycbZ 3052625..3054385 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=287028 AOY87_RS15280 WP_000839153.1 3049157..3049786(-) (sxy/tfoX) [Escherichia coli strain A34]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287028 AOY87_RS15280 WP_000839153.1 3049157..3049786(-) (sxy/tfoX) [Escherichia coli strain A34]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGATTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment