Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7I31_RS06920 Genome accession   NZ_CP028724
Coordinates   1418323..1418889 (+) Length   188 a.a.
NCBI ID   WP_002364599.1    Uniprot ID   A0A1B4XKB5
Organism   Enterococcus faecalis strain CVM N60443F     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1413323..1423889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7I31_RS06910 gyrA 1415300..1417801 (+) 2502 WP_002361457.1 DNA gyrase subunit A -
  C7I31_RS06915 rpsF 1417976..1418278 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  C7I31_RS06920 ssb 1418323..1418889 (+) 567 WP_002364599.1 single-stranded DNA-binding protein Machinery gene
  C7I31_RS06925 rpsR 1418915..1419154 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  C7I31_RS06930 - 1419311..1421334 (+) 2024 Protein_1293 DHH family phosphoesterase -
  C7I31_RS06935 rplI 1421340..1421792 (+) 453 WP_002356023.1 50S ribosomal protein L9 -
  C7I31_RS06940 dnaB 1422065..1423432 (+) 1368 WP_029681518.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20574.18 Da        Isoelectric Point: 4.6010

>NTDB_id=286736 C7I31_RS06920 WP_002364599.1 1418323..1418889(+) (ssb) [Enterococcus faecalis strain CVM N60443F]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=286736 C7I31_RS06920 WP_002364599.1 1418323..1418889(+) (ssb) [Enterococcus faecalis strain CVM N60443F]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XKB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.543

Multiple sequence alignment