Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C7I32_RS05380 | Genome accession | NZ_CP028720 |
| Coordinates | 1020889..1021455 (-) | Length | 188 a.a. |
| NCBI ID | WP_002364599.1 | Uniprot ID | A0A1B4XKB5 |
| Organism | Enterococcus faecalis strain CVM N48037F | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1007276..1071411 | 1020889..1021455 | within | 0 |
Gene organization within MGE regions
Location: 1007276..1071411
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7I32_RS05335 | - | 1008296..1008808 (-) | 513 | WP_002385473.1 | mannose/fructose/sorbose PTS transporter subunit IIB | - |
| C7I32_RS05340 | - | 1009011..1011896 (-) | 2886 | WP_002356028.1 | sigma 54-interacting transcriptional regulator | - |
| C7I32_RS05345 | - | 1012149..1013780 (+) | 1632 | WP_002359215.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| C7I32_RS05350 | - | 1013820..1014689 (-) | 870 | WP_002359214.1 | DegV family protein | - |
| C7I32_RS05355 | - | 1014814..1016106 (-) | 1293 | WP_002359213.1 | adenylosuccinate synthase | - |
| C7I32_RS05360 | dnaB | 1016344..1017711 (-) | 1368 | WP_002381331.1 | replicative DNA helicase | - |
| C7I32_RS05365 | rplI | 1017985..1018437 (-) | 453 | WP_002356023.1 | 50S ribosomal protein L9 | - |
| C7I32_RS05370 | - | 1018443..1020467 (-) | 2025 | WP_002363542.1 | DHH family phosphoesterase | - |
| C7I32_RS05375 | rpsR | 1020624..1020863 (-) | 240 | WP_002356021.1 | 30S ribosomal protein S18 | - |
| C7I32_RS05380 | ssb | 1020889..1021455 (-) | 567 | WP_002364599.1 | single-stranded DNA-binding protein | Machinery gene |
| C7I32_RS05385 | rpsF | 1021500..1021802 (-) | 303 | WP_002356019.1 | 30S ribosomal protein S6 | - |
| C7I32_RS05390 | gyrA | 1021977..1024478 (-) | 2502 | WP_002361457.1 | DNA gyrase subunit A | - |
| C7I32_RS05395 | gyrB | 1024534..1026483 (-) | 1950 | WP_002359210.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| C7I32_RS05400 | recF | 1026480..1027607 (-) | 1128 | WP_002356016.1 | DNA replication/repair protein RecF | - |
| C7I32_RS05405 | yaaA | 1027594..1027839 (-) | 246 | WP_002356015.1 | S4 domain-containing protein YaaA | - |
| C7I32_RS05410 | dnaN | 1028418..1029548 (-) | 1131 | WP_002356014.1 | DNA polymerase III subunit beta | - |
| C7I32_RS05415 | dnaA | 1029750..1031093 (-) | 1344 | WP_002356013.1 | chromosomal replication initiator protein DnaA | - |
| C7I32_RS05420 | rpmH | 1031616..1031750 (+) | 135 | WP_002356012.1 | 50S ribosomal protein L34 | - |
| C7I32_RS05425 | rnpA | 1031954..1032310 (+) | 357 | WP_002356011.1 | ribonuclease P protein component | - |
| C7I32_RS05430 | - | 1032310..1033137 (+) | 828 | WP_002356010.1 | YidC/Oxa1 family membrane protein insertase | - |
| C7I32_RS05435 | jag | 1033152..1033928 (+) | 777 | WP_002361456.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| C7I32_RS05440 | - | 1034106..1034828 (+) | 723 | WP_002363545.1 | response regulator transcription factor | - |
| C7I32_RS05445 | - | 1034872..1035567 (-) | 696 | WP_002356006.1 | GntR family transcriptional regulator | - |
| C7I32_RS05450 | - | 1035701..1037098 (-) | 1398 | WP_002410309.1 | CitMHS family transporter | - |
| C7I32_RS05455 | - | 1037502..1037864 (+) | 363 | WP_002356004.1 | hypothetical protein | - |
| C7I32_RS05460 | - | 1037848..1038249 (+) | 402 | WP_010830567.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit | - |
| C7I32_RS05465 | - | 1038279..1039394 (+) | 1116 | WP_002383526.1 | sodium ion-translocating decarboxylase subunit beta | - |
| C7I32_RS16425 | - | 1039416..1039550 (+) | 135 | WP_002356001.1 | OadG-related small transporter subunit | - |
| C7I32_RS05475 | citC | 1039583..1040575 (+) | 993 | WP_002378671.1 | [citrate (pro-3S)-lyase] ligase | - |
| C7I32_RS05480 | citD | 1040581..1040889 (+) | 309 | WP_002355999.1 | citrate lyase acyl carrier protein | - |
| C7I32_RS05485 | citE | 1040877..1041764 (+) | 888 | WP_002355998.1 | citrate (pro-3S)-lyase subunit beta | - |
| C7I32_RS05490 | citF | 1041767..1043299 (+) | 1533 | WP_002355996.1 | citrate lyase subunit alpha | - |
| C7I32_RS05495 | citX | 1043292..1043828 (+) | 537 | WP_002403986.1 | citrate lyase holo-[acyl-carrier protein] synthase | - |
| C7I32_RS05500 | - | 1043821..1045218 (+) | 1398 | WP_002359205.1 | oxaloacetate decarboxylase subunit alpha | - |
| C7I32_RS05505 | - | 1045336..1046508 (+) | 1173 | WP_033626615.1 | NADP-dependent malic enzyme | - |
| C7I32_RS05510 | citG | 1046515..1047384 (+) | 870 | WP_033593112.1 | triphosphoribosyl-dephospho-CoA synthase CitG | - |
| C7I32_RS05515 | - | 1047848..1049065 (-) | 1218 | WP_001291561.1 | tyrosine-type recombinase/integrase | - |
| C7I32_RS05520 | - | 1049147..1049350 (-) | 204 | WP_000814511.1 | excisionase | - |
| C7I32_RS16320 | - | 1049334..1049585 (+) | 252 | WP_001845478.1 | hypothetical protein | - |
| C7I32_RS05530 | - | 1049811..1050041 (-) | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| C7I32_RS05535 | - | 1050038..1050460 (-) | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| C7I32_RS05545 | - | 1050965..1051318 (+) | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| C7I32_RS05550 | - | 1051378..1051544 (-) | 167 | Protein_1005 | cysteine-rich KTR domain-containing protein | - |
| C7I32_RS05555 | tet(M) | 1051663..1053582 (-) | 1920 | WP_000691736.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| C7I32_RS16550 | - | 1053598..1053645 (-) | 48 | Protein_1007 | hypothetical protein | - |
| C7I32_RS05565 | - | 1053959..1054891 (-) | 933 | WP_001224318.1 | conjugal transfer protein | - |
| C7I32_RS05570 | - | 1054888..1055889 (-) | 1002 | WP_000769868.1 | lysozyme family protein | - |
| C7I32_RS05575 | - | 1055886..1058063 (-) | 2178 | WP_000804748.1 | CD3337/EF1877 family mobilome membrane protein | - |
| C7I32_RS05580 | - | 1058066..1060513 (-) | 2448 | WP_000331160.1 | ATP-binding protein | - |
| C7I32_RS05585 | - | 1060497..1060889 (-) | 393 | WP_000723888.1 | conjugal transfer protein | - |
| C7I32_RS05590 | - | 1060978..1061475 (-) | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| C7I32_RS05595 | - | 1061592..1061813 (-) | 222 | WP_001009056.1 | hypothetical protein | - |
| C7I32_RS05600 | mobT | 1061856..1063061 (-) | 1206 | WP_000398284.1 | MobT family relaxase | - |
| C7I32_RS05605 | - | 1063084..1063236 (-) | 153 | WP_000879507.1 | hypothetical protein | - |
| C7I32_RS05610 | - | 1063239..1064624 (-) | 1386 | WP_000813488.1 | FtsK/SpoIIIE domain-containing protein | - |
| C7I32_RS05615 | - | 1064653..1065039 (-) | 387 | WP_000985015.1 | YdcP family protein | - |
| C7I32_RS05620 | - | 1065055..1065369 (-) | 315 | WP_000420682.1 | YdcP family protein | - |
| C7I32_RS05630 | - | 1066162..1071126 (+) | 4965 | WP_075320393.1 | Ig-like domain-containing protein | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20574.18 Da Isoelectric Point: 4.6010
>NTDB_id=286693 C7I32_RS05380 WP_002364599.1 1020889..1021455(-) (ssb) [Enterococcus faecalis strain CVM N48037F]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF
Nucleotide
Download Length: 567 bp
>NTDB_id=286693 C7I32_RS05380 WP_002364599.1 1020889..1021455(-) (ssb) [Enterococcus faecalis strain CVM N48037F]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.638 |
100 |
0.606 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.85 |
100 |
0.543 |