Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ECH74115_RS07370 | Genome accession | NC_011353 |
| Coordinates | 1396799..1397275 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli O157:H7 str. EC4115 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1391799..1402275
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECH74115_RS07345 (ECH74115_1397) | - | 1393077..1393982 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| ECH74115_RS07350 (ECH74115_1398) | - | 1393979..1395049 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| ECH74115_RS07360 (ECH74115_1400) | - | 1395389..1396207 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| ECH74115_RS07365 (ECH74115_1401) | - | 1396298..1396783 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| ECH74115_RS07370 (ECH74115_1402) | radC | 1396799..1397275 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| ECH74115_RS07375 (ECH74115_1403) | - | 1397338..1397559 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| ECH74115_RS07385 (ECH74115_1405) | - | 1397722..1398096 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| ECH74115_RS07390 (ECH74115_1406) | - | 1398143..1398517 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| ECH74115_RS07395 (ECH74115_1407) | - | 1398514..1399005 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| ECH74115_RS07400 (ECH74115_1408) | - | 1399017..1399214 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| ECH74115_RS07405 (ECH74115_1409) | - | 1399299..1400141 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| ECH74115_RS07415 (ECH74115_1411) | ghrA | 1400612..1401550 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=28638 ECH74115_RS07370 WP_001186738.1 1396799..1397275(+) (radC) [Escherichia coli O157:H7 str. EC4115]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=28638 ECH74115_RS07370 WP_001186738.1 1396799..1397275(+) (radC) [Escherichia coli O157:H7 str. EC4115]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |