Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SHEW185_RS02865 Genome accession   NC_009665
Coordinates   641391..642095 (+) Length   234 a.a.
NCBI ID   WP_006083192.1    Uniprot ID   A0A9X2WXK9
Organism   Shewanella baltica OS185     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 636391..647095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEW185_RS02855 (Shew185_0554) uvrA 636616..639498 (-) 2883 WP_012088166.1 excinuclease ABC subunit UvrA -
  SHEW185_RS02860 (Shew185_0555) - 639914..641281 (+) 1368 WP_006083193.1 MFS transporter -
  SHEW185_RS02865 (Shew185_0556) ssb 641391..642095 (+) 705 WP_006083192.1 single-stranded DNA-binding protein Machinery gene
  SHEW185_RS02870 (Shew185_0557) - 642271..643593 (+) 1323 WP_006083191.1 site-specific integrase -
  SHEW185_RS02875 (Shew185_0558) - 643577..645130 (+) 1554 WP_006083190.1 site-specific integrase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25189.73 Da        Isoelectric Point: 5.2341

>NTDB_id=28593 SHEW185_RS02865 WP_006083192.1 641391..642095(+) (ssb) [Shewanella baltica OS185]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=28593 SHEW185_RS02865 WP_006083192.1 641391..642095(+) (ssb) [Shewanella baltica OS185]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCTAACATCACAGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTTGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGACCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGCCAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTACCAATCTGCACCACAACAAGCGGCACCAGCGCAAAATCAATATGCGCCAGCGCCTCAAGCTGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAATATGCTGCGCCAGCACCTGCTCAGCAGCAATATGGACAGCAACAAGCTCAACCACAACA
AGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCAGCGCCTGCTTACCAAGCGCCAGCAGCACCGGCACAACGTCCAGCAC
CACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.571

74.786

0.483
  ssb Glaesserella parasuis strain SC1401

45.022

98.718

0.444
  ssb Neisseria meningitidis MC58

41.558

98.718

0.41
  ssb Neisseria gonorrhoeae MS11

40.693

98.718

0.402

Multiple sequence alignment