Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EGM66_RS06065 Genome accession   NZ_CP033884
Coordinates   792496..793233 (+) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain 50579417     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 787496..798233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM66_RS06050 (EGM66_06060) clpC 787950..790523 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EGM66_RS06055 (EGM66_06065) yfiH 790653..791384 (-) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  EGM66_RS06060 (EGM66_06070) rluD 791381..792361 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EGM66_RS06065 (EGM66_06075) comL 792496..793233 (+) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  EGM66_RS06070 (EGM66_06080) raiA 793504..793845 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EGM66_RS06075 (EGM66_06085) pheL 793949..793996 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EGM66_RS06080 (EGM66_06090) pheA 794095..795255 (+) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  EGM66_RS06085 (EGM66_06095) tyrA 795298..796419 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EGM66_RS06090 (EGM66_06100) aroF 796430..797500 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EGM66_RS06095 (EGM66_06105) yfiL 797710..798075 (+) 366 WP_001314943.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=285703 EGM66_RS06065 WP_000197689.1 792496..793233(+) (comL) [Escherichia coli strain 50579417]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=285703 EGM66_RS06065 WP_000197689.1 792496..793233(+) (comL) [Escherichia coli strain 50579417]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376