Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NGK_RS08825 Genome accession   NC_011035
Coordinates   1620036..1620431 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae NCCP11945     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1615036..1625431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK_RS08795 (NGK_1958) - 1615546..1615968 (-) 423 WP_003691751.1 very short patch repair endonuclease -
  NGK_RS16050 (NGK_1959) - 1615974..1616570 (-) 597 WP_012503916.1 TIGR02391 family protein -
  NGK_RS16055 (NGK_1960) - 1616760..1617617 (-) 858 WP_012503917.1 ATP-binding protein -
  NGK_RS08805 (NGK_1961) - 1617631..1617960 (-) 330 WP_002234365.1 DNA cytosine methyltransferase -
  NGK_RS08810 (NGK_1962) - 1617999..1618607 (-) 609 WP_080229275.1 DNA cytosine methyltransferase -
  NGK_RS08815 (NGK_1963) - 1618976..1619122 (+) 147 WP_003691757.1 hypothetical protein -
  NGK_RS08820 comP 1619499..1619948 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NGK_RS08825 comE 1620036..1620431 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NGK_RS16060 (NGK_1966) - 1620536..1620652 (-) 117 Protein_1658 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=28566 NGK_RS08825 WP_003703428.1 1620036..1620431(-) (comE) [Neisseria gonorrhoeae NCCP11945]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=28566 NGK_RS08825 WP_003703428.1 1620036..1620431(-) (comE) [Neisseria gonorrhoeae NCCP11945]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment