Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   EGM95_RS19355 Genome accession   NZ_CP033869
Coordinates   3937611..3938246 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain MRSN15313     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3932611..3943246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM95_RS19335 (EGM95_19335) - 3932688..3933503 (+) 816 WP_000011163.1 DsbC family protein -
  EGM95_RS19340 (EGM95_19340) - 3933748..3935049 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  EGM95_RS19345 (EGM95_19345) thrC 3935105..3936244 (+) 1140 WP_000063593.1 threonine synthase -
  EGM95_RS19350 (EGM95_19350) pbpG 3936352..3937398 (-) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  EGM95_RS19355 (EGM95_19355) letA 3937611..3938246 (+) 636 WP_000633799.1 response regulator Regulator
  EGM95_RS19360 (EGM95_19360) pilS 3938257..3939825 (+) 1569 WP_001160330.1 sensor histidine kinase Regulator
  EGM95_RS19365 (EGM95_19365) - 3939849..3940994 (+) 1146 Protein_3745 sigma-54-dependent transcriptional regulator -
  EGM95_RS21460 (EGM95_19375) - 3942274..3942459 (+) 186 Protein_3747 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=285613 EGM95_RS19355 WP_000633799.1 3937611..3938246(+) (letA) [Acinetobacter baumannii strain MRSN15313]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=285613 EGM95_RS19355 WP_000633799.1 3937611..3938246(+) (letA) [Acinetobacter baumannii strain MRSN15313]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGCGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55

  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55


Multiple sequence alignment