Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DBQ26_RS18290 Genome accession   NZ_CP028574
Coordinates   3457066..3458634 (+) Length   522 a.a.
NCBI ID   WP_032006848.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP005046     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3452066..3463634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS18270 (DBQ26_18270) hom 3452560..3453861 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  DBQ26_RS18275 (DBQ26_18275) thrC 3453916..3455055 (+) 1140 WP_002048893.1 threonine synthase -
  DBQ26_RS18280 (DBQ26_18280) pbpG 3455161..3456207 (-) 1047 WP_005804058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  DBQ26_RS18285 (DBQ26_18285) gacA 3456420..3457055 (+) 636 WP_002121174.1 response regulator -
  DBQ26_RS18290 (DBQ26_18290) pilS 3457066..3458634 (+) 1569 WP_032006848.1 sensor histidine kinase Regulator
  DBQ26_RS18295 (DBQ26_18295) pilR 3458659..3460071 (+) 1413 WP_057089980.1 sigma-54-dependent transcriptional regulator Regulator
  DBQ26_RS18300 (DBQ26_18300) ctpA 3460075..3461259 (-) 1185 WP_032006850.1 S41 family peptidase -
  DBQ26_RS18305 (DBQ26_18305) gpmI 3461275..3462822 (-) 1548 WP_017400161.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59066.66 Da        Isoelectric Point: 6.5701

>NTDB_id=285603 DBQ26_RS18290 WP_032006848.1 3457066..3458634(+) (pilS) [Acinetobacter pittii strain WCHAP005046]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTISNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYNIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDHLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNGFIKTLLDEDLSDVK
HAIQLKISDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECSIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=285603 DBQ26_RS18290 WP_032006848.1 3457066..3458634(+) (pilS) [Acinetobacter pittii strain WCHAP005046]
ATGCAATTCCCCTTAAACTCATCCTTGTCCAATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGTCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCAATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTAGTAATAGTGCCTTA
TTAGCCTTTTTATTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTAACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAAAACTACAACATTGTTTTAAGTAATCCAGCTGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATACCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATCATTTAAAAGAAGGTGATCGATTTAT
TTTTGAATCTCGACTGTCAGCTTATTCTATTAATATTAAAGTGCAACACCTTTTGGTGCCACAGCAAGCATTGACGCTAC
TCATTTTACAAGATGCACAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGCCAACTATCAGCAAGT
ATTGCACATGAGATCCGTAACCCTCTTGCAGCCATTGTTCAAGCGAATGAATTACTCAAAGACAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCAATCCAGATTGAATTAAACGGCTTCATAAAAACGTTATTAGATGAGGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAATTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAGCTCAGACAAGTCCTAATTAA
CCTTGTTAGAAATGCTCTACGCCACAATGCACCCGATTCACCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGAGCATGCTTCAGAATAGAATGCTCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-251)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.444

100

0.944

Multiple sequence alignment