Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | DBQ26_RS10540 | Genome accession | NZ_CP028574 |
| Coordinates | 1912625..1913005 (-) | Length | 126 a.a. |
| NCBI ID | WP_017482272.1 | Uniprot ID | A0A9X3QIG5 |
| Organism | Acinetobacter pittii strain WCHAP005046 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1907625..1918005
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBQ26_RS10510 (DBQ26_10510) | tadA | 1907689..1908192 (-) | 504 | WP_002121378.1 | tRNA adenosine(34) deaminase TadA | - |
| DBQ26_RS10515 (DBQ26_10515) | hibch | 1908198..1909322 (-) | 1125 | WP_014206599.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DBQ26_RS10520 (DBQ26_10520) | ung | 1909319..1910032 (-) | 714 | WP_005069527.1 | uracil-DNA glycosylase | - |
| DBQ26_RS10525 (DBQ26_10525) | - | 1910086..1910682 (-) | 597 | WP_002121363.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| DBQ26_RS10530 (DBQ26_10530) | gspK | 1910910..1911869 (-) | 960 | WP_017482270.1 | type II secretion system minor pseudopilin GspK | - |
| DBQ26_RS10535 (DBQ26_10535) | xcpW | 1911870..1912625 (-) | 756 | WP_017482271.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| DBQ26_RS10540 (DBQ26_10540) | xcpV | 1912625..1913005 (-) | 381 | WP_017482272.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| DBQ26_RS10545 (DBQ26_10545) | - | 1912995..1913549 (-) | 555 | WP_017482273.1 | type II secretion system protein | - |
| DBQ26_RS10550 (DBQ26_10550) | - | 1913556..1914164 (-) | 609 | WP_005069536.1 | TetR/AcrR family transcriptional regulator | - |
| DBQ26_RS10555 (DBQ26_10555) | ycfH | 1914201..1914974 (-) | 774 | WP_017482274.1 | TatD family hydrolase | - |
| DBQ26_RS10560 (DBQ26_10560) | pilZ | 1914992..1915333 (-) | 342 | WP_002121335.1 | PilZ domain-containing protein | - |
| DBQ26_RS10565 (DBQ26_10565) | holB | 1915344..1916324 (-) | 981 | WP_017482275.1 | DNA polymerase III subunit delta' | - |
| DBQ26_RS10570 (DBQ26_10570) | kdsB | 1916338..1917099 (-) | 762 | WP_002121419.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.17 Da Isoelectric Point: 9.4463
>NTDB_id=285585 DBQ26_RS10540 WP_017482272.1 1912625..1913005(-) (xcpV) [Acinetobacter pittii strain WCHAP005046]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=285585 DBQ26_RS10540 WP_017482272.1 1912625..1913005(-) (xcpV) [Acinetobacter pittii strain WCHAP005046]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCAACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCAACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
93.651 |
100 |
0.937 |