Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   CDG55_RS12355 Genome accession   NZ_CP028561
Coordinates   2280172..2281059 (-) Length   295 a.a.
NCBI ID   WP_087537280.1    Uniprot ID   A0A2R4TM79
Organism   Acinetobacter sp. WCHA45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275172..2286059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS12335 (CDG55_12330) miaB 2276600..2278051 (+) 1452 WP_005162399.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CDG55_RS12340 (CDG55_12335) - 2278091..2279167 (+) 1077 WP_005162400.1 PhoH family protein -
  CDG55_RS12345 (CDG55_12340) ybeY 2279240..2279725 (+) 486 WP_087537278.1 rRNA maturation RNase YbeY -
  CDG55_RS12350 (CDG55_12345) - 2279737..2280036 (+) 300 WP_087537279.1 antibiotic biosynthesis monooxygenase family protein -
  CDG55_RS12355 (CDG55_12350) tonB2 2280172..2281059 (-) 888 WP_087537280.1 energy transducer TonB Machinery gene
  CDG55_RS12360 (CDG55_12355) - 2281303..2281983 (+) 681 WP_087537281.1 hypothetical protein -
  CDG55_RS12365 (CDG55_12360) - 2282179..2282883 (+) 705 WP_087537282.1 DUF3108 domain-containing protein -
  CDG55_RS12370 (CDG55_12365) - 2282972..2283547 (+) 576 WP_087537283.1 xanthine phosphoribosyltransferase -
  CDG55_RS12375 (CDG55_12370) - 2283596..2284378 (-) 783 WP_087537284.1 YwqG family protein -
  CDG55_RS12380 (CDG55_12375) thyA 2284550..2285392 (+) 843 WP_087537285.1 thymidylate synthase -
  CDG55_RS12385 (CDG55_12380) - 2285415..2285924 (+) 510 WP_087537286.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33581.28 Da        Isoelectric Point: 8.0762

>NTDB_id=285522 CDG55_RS12355 WP_087537280.1 2280172..2281059(-) (tonB2) [Acinetobacter sp. WCHA45]
MLKKLNFQTSSLLHWWKDPVFLGAIVFAACLHGVTLSIKFAMPSPTDTSTKEIAVTVRTSQEKVKDADFLAQADQKGSGE
FRQQHLMSSDMPSPMEADATTGESELESLEKVQQKRELKFEEKVLMTVLSWQKQVEQTERKKTLDELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDEAKQQHLSGEVRLMVILNAEGGIRAIRL
IESSGHPILDEAAKASVRRGAPFGPFDNNMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=285522 CDG55_RS12355 WP_087537280.1 2280172..2281059(-) (tonB2) [Acinetobacter sp. WCHA45]
ATGTTGAAGAAATTAAATTTTCAAACCAGCTCGCTATTGCACTGGTGGAAAGACCCTGTATTTTTGGGGGCAATTGTTTT
TGCAGCATGTTTGCATGGAGTAACCCTGTCCATAAAATTTGCAATGCCATCACCGACCGATACCTCAACCAAAGAAATTG
CAGTTACGGTTCGTACAAGTCAAGAAAAAGTCAAAGATGCCGACTTTTTGGCGCAAGCTGACCAAAAGGGTTCTGGTGAG
TTCCGTCAGCAACACCTTATGTCGAGTGACATGCCCTCACCGATGGAAGCAGATGCGACAACAGGAGAGTCTGAGCTCGA
AAGTTTAGAGAAAGTCCAGCAAAAACGAGAATTAAAATTTGAAGAAAAAGTGCTCATGACGGTTTTAAGCTGGCAGAAGC
AAGTAGAGCAAACTGAACGTAAAAAAACCTTAGATGAGTTACAGAGTCAATTTCAAGCCAAAGCCGCGATGGTTGCGAGT
TTGGAAGCACAATATTTACAACGTCAGCAAAATTTTAGTCGTAAACAACGTATTAAAACAGTAGATGGGATTCAGGCAAA
ACAAGATGCGTCAGCAGCTTATCTTGATAAATTTCGTCAGAAAGTTGAACTATACGGTAATCGTTATTATCCAGATGAAG
CGAAACAACAACATTTATCGGGTGAAGTACGTTTAATGGTGATCCTGAATGCCGAAGGTGGAATTCGTGCAATTCGTCTT
ATAGAAAGTTCTGGACATCCCATTTTAGATGAAGCTGCAAAAGCTTCGGTGCGCCGTGGAGCACCTTTTGGACCCTTTGA
TAATAATATGAAAAAGGACATTTCTGAATTACGAATTATTCGAACATGGCGCTTTGATCCTGTCGATGCGGAATTTGAAG
TACATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4TM79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.576

100

0.746

Multiple sequence alignment