Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CDG55_RS03030 Genome accession   NZ_CP028561
Coordinates   372102..372788 (-) Length   228 a.a.
NCBI ID   WP_087536051.1    Uniprot ID   A0A2R4THI4
Organism   Acinetobacter sp. WCHA45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367102..377788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS02995 (CDG55_02995) - 367133..367951 (+) 819 WP_005156344.1 ABC transporter ATP-binding protein -
  CDG55_RS03000 (CDG55_03000) mlaE 367948..368727 (+) 780 WP_004660307.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  CDG55_RS03005 (CDG55_03005) - 368727..369404 (+) 678 WP_087536048.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CDG55_RS03010 (CDG55_03010) - 369424..370056 (+) 633 WP_005156334.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  CDG55_RS03015 (CDG55_03015) - 370068..370355 (+) 288 WP_005156331.1 STAS domain-containing protein -
  CDG55_RS03020 (CDG55_03020) - 370398..371411 (-) 1014 WP_087536049.1 CorA family divalent cation transporter -
  CDG55_RS03025 (CDG55_03025) - 371756..372151 (+) 396 WP_171287506.1 NUDIX hydrolase -
  CDG55_RS03030 (CDG55_03030) comF 372102..372788 (-) 687 WP_087536051.1 ComF family protein Machinery gene
  CDG55_RS03035 (CDG55_03035) recG 372781..374826 (-) 2046 WP_087536052.1 ATP-dependent DNA helicase RecG -
  CDG55_RS03040 (CDG55_03040) - 374845..375663 (+) 819 WP_087536053.1 NAD-dependent epimerase/dehydratase family protein -
  CDG55_RS03045 (CDG55_03045) - 375755..376467 (+) 713 Protein_351 IS5 family transposase -
  CDG55_RS03050 (CDG55_03050) - 376606..377586 (+) 981 WP_087536449.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26320.59 Da        Isoelectric Point: 9.2301

>NTDB_id=285505 CDG55_RS03030 WP_087536051.1 372102..372788(-) (comF) [Acinetobacter sp. WCHA45]
MFKLIQTSAKQIFDYLTPCSLCDIGIRKQYGVCQSCWNQLPWLKQSIQRNQQQIFVVCHYQYPIDRIIQQFKYEQKLHHQ
RLLEGLLQQLKLPKVHAIVPMPISTDRLVERGFNQTLLLAQALSKSLNIPIWQPIQRLDQHSQKGLSRIERLENIEQQFV
AAPPNHLRYRKVLIVDDVVTTGSSITALSQVLQQLGCQQVYSICLAAPIRNNASSLNFADTMESPRVE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=285505 CDG55_RS03030 WP_087536051.1 372102..372788(-) (comF) [Acinetobacter sp. WCHA45]
ATGTTTAAATTAATTCAAACATCAGCAAAACAAATCTTTGATTATCTAACGCCATGTAGCCTGTGTGATATTGGGATTAG
GAAGCAATACGGAGTATGTCAAAGTTGTTGGAATCAGTTACCTTGGTTAAAACAATCCATTCAACGTAATCAACAACAAA
TATTTGTTGTATGCCATTATCAATATCCGATTGATCGCATCATTCAGCAATTTAAATATGAACAAAAATTGCATCATCAA
CGACTATTGGAAGGACTGCTACAACAACTCAAGCTTCCTAAAGTTCATGCCATCGTTCCAATGCCGATTTCAACTGATCG
ATTAGTTGAACGAGGTTTCAACCAAACGCTTTTACTGGCCCAAGCACTTAGTAAAAGCTTAAATATCCCTATCTGGCAAC
CTATACAACGCTTGGATCAACACTCGCAAAAAGGCTTATCGCGCATCGAAAGACTAGAAAATATTGAACAGCAATTTGTG
GCTGCACCGCCCAATCATCTTCGTTATCGCAAAGTCTTGATCGTCGATGATGTCGTCACAACGGGCAGTTCAATTACCGC
CTTATCTCAAGTCTTGCAACAACTTGGCTGCCAACAGGTTTATAGTATTTGTTTAGCAGCCCCTATCCGTAATAATGCTA
GTTCTCTAAATTTTGCTGACACCATGGAATCACCACGTGTTGAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4THI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.667

90.789

0.605
  comF Acinetobacter baumannii D1279779

66.184

90.789

0.601

Multiple sequence alignment