Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSPA7_RS10420 Genome accession   NC_009656
Coordinates   2234439..2235074 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas paraeruginosa PA7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2229439..2240074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSPA7_RS10405 (PSPA7_2175) - 2230136..2231380 (+) 1245 WP_003156869.1 lipoprotein-releasing ABC transporter permease subunit -
  PSPA7_RS10410 (PSPA7_2176) - 2231480..2232013 (-) 534 WP_012075161.1 DUF2062 domain-containing protein -
  PSPA7_RS10415 (PSPA7_2177) comA 2232144..2234366 (+) 2223 WP_012075162.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSPA7_RS10420 (PSPA7_2178) exbB 2234439..2235074 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSPA7_RS10425 (PSPA7_2179) - 2235071..2235511 (+) 441 WP_012075163.1 ExbD/TolR family protein -
  PSPA7_RS10430 (PSPA7_2180) lpxK 2235511..2236509 (+) 999 WP_003157521.1 tetraacyldisaccharide 4'-kinase -
  PSPA7_RS10435 (PSPA7_2181) - 2236547..2236732 (+) 186 WP_003157522.1 Trm112 family protein -
  PSPA7_RS10440 (PSPA7_2182) kdsB 2236732..2237496 (+) 765 WP_012075164.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSPA7_RS10445 (PSPA7_2183) - 2237496..2237960 (+) 465 WP_012075165.1 low molecular weight protein-tyrosine-phosphatase -
  PSPA7_RS10450 (PSPA7_2184) murB 2237957..2238976 (+) 1020 WP_012075166.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=28543 PSPA7_RS10420 WP_003091163.1 2234439..2235074(+) (exbB) [Pseudomonas paraeruginosa PA7]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=28543 PSPA7_RS10420 WP_003091163.1 2234439..2235074(+) (exbB) [Pseudomonas paraeruginosa PA7]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCACTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCCAAGCACGGACGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCGGCGTCATCCACGAACTTGAGCGCTATCT
CAACGCCCTCGGCACCATCGCCGCGATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCGCTGATCACCACGGCCGCC
GGCCTGCTGGTGGCGATCCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGTCGCGTCGACGAGCTGGTGATCGCCATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment