Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EGY17_RS02300 Genome accession   NZ_CP033850
Coordinates   120347..121084 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_497     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115347..126084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY17_RS02285 (EGY17_02290) clpC 115801..118374 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EGY17_RS02290 (EGY17_02295) yfiH 118504..119235 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  EGY17_RS02295 (EGY17_02300) rluD 119232..120212 (-) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EGY17_RS02300 (EGY17_02305) comL 120347..121084 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EGY17_RS02305 (EGY17_02310) - 121188..122534 (+) 1347 WP_024181829.1 IS4-like element IS4 family transposase -
  EGY17_RS02310 (EGY17_02315) raiA 122795..123136 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EGY17_RS02315 (EGY17_02320) pheL 123240..123287 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EGY17_RS02320 (EGY17_02325) pheA 123386..124546 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  EGY17_RS02325 (EGY17_02330) tyrA 124589..125710 (-) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=285376 EGY17_RS02300 WP_000197686.1 120347..121084(+) (comL) [Escherichia coli strain FDAARGOS_497]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=285376 EGY17_RS02300 WP_000197686.1 120347..121084(+) (comL) [Escherichia coli strain FDAARGOS_497]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376