Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGY29_RS14120 Genome accession   NZ_CP033843
Coordinates   2977854..2978528 (+) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain FDAARGOS_501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2972854..2983528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY29_RS14105 (EGY29_14060) - 2973400..2976006 (-) 2607 WP_003114359.1 phosphomannomutase/phosphoglucomutase -
  EGY29_RS14110 (EGY29_14065) dut 2976043..2976498 (-) 456 WP_003096567.1 dUTP diphosphatase -
  EGY29_RS14115 (EGY29_14070) coaBC 2976506..2977714 (-) 1209 WP_003096565.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EGY29_RS14120 (EGY29_14075) radC 2977854..2978528 (+) 675 WP_003096559.1 RadC family protein Machinery gene
  EGY29_RS14125 (EGY29_14080) - 2978791..2980371 (-) 1581 WP_003096557.1 ABC transporter substrate-binding protein -
  EGY29_RS14130 (EGY29_14085) rpmB 2980727..2980963 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  EGY29_RS14135 (EGY29_14090) rpmG 2980975..2981130 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  EGY29_RS14140 (EGY29_14095) - 2981267..2981629 (-) 363 WP_003096551.1 cupin domain-containing protein -
  EGY29_RS14145 (EGY29_14100) - 2981695..2983029 (-) 1335 WP_003096546.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=285330 EGY29_RS14120 WP_003096559.1 2977854..2978528(+) (radC) [Pseudomonas aeruginosa strain FDAARGOS_501]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=285330 EGY29_RS14120 WP_003096559.1 2977854..2978528(+) (radC) [Pseudomonas aeruginosa strain FDAARGOS_501]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397