Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ASUC_RS09250 Genome accession   NC_009655
Coordinates   1967979..1968512 (-) Length   177 a.a.
NCBI ID   WP_012073518.1    Uniprot ID   A6VQ94
Organism   Actinobacillus succinogenes 130Z     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1962979..1973512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS09235 (Asuc_1786) comQ 1966297..1966593 (-) 297 WP_012073515.1 DUF5374 domain-containing protein Machinery gene
  ASUC_RS09240 (Asuc_1787) - 1966577..1967263 (-) 687 WP_083757695.1 DUF2572 family protein -
  ASUC_RS09245 (Asuc_1788) - 1967254..1967979 (-) 726 WP_012073517.1 type II secretion system protein J -
  ASUC_RS09250 (Asuc_1789) comN 1967979..1968512 (-) 534 WP_012073518.1 type II secretion system protein Machinery gene
  ASUC_RS09275 (Asuc_1790) pal 1969532..1969990 (-) 459 WP_012073519.1 peptidoglycan-associated lipoprotein Pal -
  ASUC_RS09280 (Asuc_1791) tolB 1970009..1971292 (-) 1284 WP_012073520.1 Tol-Pal system beta propeller repeat protein TolB -
  ASUC_RS09285 (Asuc_1792) tolA 1971326..1972460 (-) 1135 Protein_1802 cell envelope integrity protein TolA -
  ASUC_RS09290 (Asuc_1793) tolR 1972476..1972901 (-) 426 WP_012073521.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 20012.18 Da        Isoelectric Point: 9.4120

>NTDB_id=28527 ASUC_RS09250 WP_012073518.1 1967979..1968512(-) (comN) [Actinobacillus succinogenes 130Z]
MRAALKGFTLVEVLLVISIMGLLAQLAFPAWQKSNAQMILSKEQHKLYLFLRRIQARVENSSDIWLIIANQNASGKKWCF
TAQIKNDYVCDCFSPSLCPKHIAAQFYTPYFPEKTTLISRQYYPSEITKFNGIRNTSPSGCFVLQADSSRTLFSFSNLGT
LKLKDYQSLSACTTGNE

Nucleotide


Download         Length: 534 bp        

>NTDB_id=28527 ASUC_RS09250 WP_012073518.1 1967979..1968512(-) (comN) [Actinobacillus succinogenes 130Z]
ATGCGGGCGGCTTTAAAAGGTTTTACCCTTGTTGAAGTATTATTAGTAATTTCAATTATGGGGTTGTTGGCACAGCTGGC
ATTTCCTGCGTGGCAAAAAAGCAATGCACAAATGATTTTGAGCAAAGAACAGCATAAACTTTATCTGTTTTTACGCCGGA
TTCAGGCAAGAGTCGAGAATTCATCGGATATCTGGCTGATTATTGCAAATCAAAATGCTTCAGGTAAAAAATGGTGTTTT
ACCGCGCAAATTAAAAACGATTACGTATGCGATTGCTTTTCTCCGTCATTATGCCCTAAACATATTGCGGCACAATTTTA
TACTCCGTATTTTCCGGAAAAAACGACGTTAATCAGCAGACAATATTATCCTTCAGAAATTACTAAGTTTAACGGAATTC
GAAATACGTCTCCTTCCGGATGTTTTGTTTTGCAGGCGGATTCCAGTCGGACATTGTTTTCATTTTCCAATCTGGGGACG
TTGAAACTGAAAGATTACCAATCTTTGAGCGCTTGCACGACGGGAAACGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6VQ94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

51.497

94.35

0.486

Multiple sequence alignment