Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ASUC_RS09235 Genome accession   NC_009655
Coordinates   1966297..1966593 (-) Length   98 a.a.
NCBI ID   WP_012073515.1    Uniprot ID   -
Organism   Actinobacillus succinogenes 130Z     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961297..1971593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS09225 (Asuc_1784) mltA 1961695..1962813 (-) 1119 WP_012073513.1 murein transglycosylase A -
  ASUC_RS09230 (Asuc_1785) recC 1962886..1966227 (-) 3342 WP_012073514.1 exodeoxyribonuclease V subunit gamma -
  ASUC_RS09235 (Asuc_1786) comQ 1966297..1966593 (-) 297 WP_012073515.1 DUF5374 domain-containing protein Machinery gene
  ASUC_RS09240 (Asuc_1787) - 1966577..1967263 (-) 687 WP_083757695.1 DUF2572 family protein -
  ASUC_RS09245 (Asuc_1788) - 1967254..1967979 (-) 726 WP_012073517.1 type II secretion system protein J -
  ASUC_RS09250 (Asuc_1789) comN 1967979..1968512 (-) 534 WP_012073518.1 type II secretion system protein Machinery gene
  ASUC_RS09275 (Asuc_1790) pal 1969532..1969990 (-) 459 WP_012073519.1 peptidoglycan-associated lipoprotein Pal -
  ASUC_RS09280 (Asuc_1791) tolB 1970009..1971292 (-) 1284 WP_012073520.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11432.35 Da        Isoelectric Point: 9.4298

>NTDB_id=28526 ASUC_RS09235 WP_012073515.1 1966297..1966593(-) (comQ) [Actinobacillus succinogenes 130Z]
MTLLLSRYGGMSLLTLIISLTLFSGIFMSISQWSSYQRKIAINTYQRYQAIQIAENQKQRQFLHLPCENIVEQNQLKFSV
QCTDKHVIVRYPAGELYL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=28526 ASUC_RS09235 WP_012073515.1 1966297..1966593(-) (comQ) [Actinobacillus succinogenes 130Z]
ATGACTTTACTCCTTAGTCGTTATGGCGGCATGAGTCTATTGACACTGATTATCAGTTTAACTTTATTCAGCGGAATTTT
CATGTCTATTAGCCAATGGTCGAGTTATCAGCGTAAAATTGCAATAAACACATATCAACGCTATCAGGCGATTCAAATTG
CGGAAAATCAAAAGCAGCGTCAGTTTTTACATTTGCCTTGCGAAAATATCGTCGAGCAGAACCAATTGAAATTTTCCGTT
CAATGCACGGATAAGCATGTCATTGTACGTTACCCGGCAGGAGAATTGTATTTATAG

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

50

100

0.5

Multiple sequence alignment