Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ASUC_RS08940 Genome accession   NC_009655
Coordinates   1899150..1901513 (-) Length   787 a.a.
NCBI ID   WP_049752192.1    Uniprot ID   -
Organism   Actinobacillus succinogenes 130Z     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894150..1906513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS08920 (Asuc_1725) - 1894874..1895479 (-) 606 WP_012073454.1 YidB family protein -
  ASUC_RS08925 (Asuc_1726) kdsB 1895516..1896295 (-) 780 WP_012073455.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ASUC_RS08930 (Asuc_1727) lpxK 1896297..1897274 (-) 978 WP_012073456.1 tetraacyldisaccharide 4'-kinase -
  ASUC_RS08935 (Asuc_1728) msbA 1897358..1899109 (-) 1752 WP_012073457.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ASUC_RS08940 (Asuc_1729) rec2 1899150..1901513 (-) 2364 WP_049752192.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ASUC_RS08945 (Asuc_1730) dksA 1901747..1902193 (+) 447 WP_012073459.1 RNA polymerase-binding protein DksA -
  ASUC_RS08950 (Asuc_1731) pcnB 1902452..1903717 (+) 1266 WP_012073460.1 polynucleotide adenylyltransferase PcnB -
  ASUC_RS08955 (Asuc_1732) folK 1903717..1904208 (+) 492 WP_012073461.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ASUC_RS08960 (Asuc_1733) - 1904269..1905342 (-) 1074 WP_012073462.1 homoserine O-acetyltransferase -
  ASUC_RS08965 (Asuc_1734) - 1905538..1906281 (+) 744 WP_012073463.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87868.65 Da        Isoelectric Point: 10.3484

>NTDB_id=28525 ASUC_RS08940 WP_049752192.1 1899150..1901513(-) (rec2) [Actinobacillus succinogenes 130Z]
MEKFVLGCIAGVLSILFLPGSRLLSLDSLFGVLFIFIVLNAYFYSRRKPRAFSIALLGLGGCVGVAISHTQALHLFEQAQ
AVSVRNITAEFRIQKVQHSGDYQTAIVRNTANRQLNYVTWNNPLPVKAGEIWRLEMRQRPLSSRLNQGGSDRQAWYFSQG
ITATGTVKSAVKIRDDFSWRETRFHQAFERTAALSQQGLLLALGFGERAWLSPEIRKVYQRTNTAHLIAISGLHIGLAMM
LGTVLGRVLQFFLPTIRISPLFPLFTGVSLAWIYVNLAGFAVSTSRALLALLLVTGLRMTRGYCSAWQLFIYGVALLLLS
NPLMVLSVGFWLSAGAVFCLILWYRIFPLRAVRWRNRPIPVKVRWIFALLHLQFGLLWLFTPVQVALFNGFSWAGLAANL
IAVPFFSFLLVPLVLFAVLTDGAGATWQIADQLAQWIARLIMRFDGYWLTVSEKTGWILTALLTLCLLMFIRRLYRELAQ
PAPSLPSHTPSLGGFSLFSENKPAELSGIVIGCLLLLSLCGGRLAYLWLQEPDWRVETLDVGQGLATLIVKNQRAVLYDT
GVAWEGGSMAEIEILPYLQRQGIVPEQLILSHDDKDHAGGARVILRTYPDIELITPSHKNYGKTDRTFCVKGLNWHWQGL
TFEALSPAEIVPRAENGDSCIIRVSDGIHRVLLTGDADVAAENRIIDRLGKINVLQVGHHGSKTSTGSRLVRQIRPDIAL
ISSGRWNPWHFPHPSVTERLIRVQSAVKNTAVSGQISVRFHGGKMALETVRTDFSPWYRGFIGESTK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=28525 ASUC_RS08940 WP_049752192.1 1899150..1901513(-) (rec2) [Actinobacillus succinogenes 130Z]
GTGGAAAAATTCGTATTGGGCTGTATCGCCGGGGTTTTGAGCATTTTGTTTTTACCCGGATCAAGATTATTATCTTTAGA
TTCCTTATTTGGCGTTTTGTTCATTTTTATCGTTCTCAATGCTTATTTTTATTCTCGGCGTAAACCACGTGCGTTTTCCA
TTGCATTGCTCGGCTTAGGGGGTTGTGTCGGCGTAGCGATTTCCCATACGCAGGCTTTGCATTTGTTTGAACAGGCTCAG
GCGGTTTCCGTGCGAAATATTACGGCGGAATTTCGTATTCAAAAAGTACAGCATTCCGGCGATTACCAAACCGCAATCGT
AAGAAATACGGCGAACCGCCAACTGAATTATGTGACTTGGAATAATCCTCTTCCAGTGAAAGCCGGTGAAATCTGGCGGC
TCGAAATGCGTCAACGTCCGTTGTCTTCCCGTTTGAATCAAGGCGGGAGCGATCGACAGGCGTGGTATTTTTCTCAGGGG
ATTACGGCTACGGGAACGGTGAAAAGTGCGGTCAAAATTCGTGATGATTTTTCATGGCGGGAAACTCGGTTTCATCAGGC
ATTCGAACGGACGGCTGCGTTATCGCAACAGGGATTGCTATTGGCGTTGGGGTTTGGCGAACGCGCTTGGTTGTCGCCCG
AAATCCGGAAAGTTTATCAGCGAACCAATACGGCACATTTAATCGCGATTTCCGGGTTGCACATCGGATTAGCGATGATG
TTGGGAACGGTTCTGGGACGGGTGTTGCAGTTTTTTCTGCCGACTATACGGATTTCGCCGCTGTTCCCGCTGTTTACAGG
TGTAAGTTTGGCATGGATTTATGTAAATCTGGCGGGGTTTGCCGTCTCCACTTCCCGTGCATTACTGGCTTTATTGCTGG
TAACGGGACTGCGTATGACACGGGGCTACTGTTCGGCTTGGCAGCTTTTTATTTACGGCGTCGCCCTTTTATTGCTGAGT
AATCCGTTGATGGTTTTATCCGTCGGTTTTTGGTTGTCGGCGGGAGCGGTGTTTTGTCTGATTTTGTGGTATCGGATTTT
CCCGCTGAGAGCCGTCCGTTGGCGCAATCGCCCGATTCCGGTCAAAGTGCGGTGGATTTTTGCATTGCTACATTTACAGT
TCGGTTTGTTATGGCTGTTTACACCCGTTCAGGTTGCTTTATTCAACGGTTTTTCCTGGGCGGGACTGGCTGCGAACCTG
ATTGCCGTCCCGTTTTTCAGCTTTTTATTAGTACCGCTGGTGTTGTTTGCCGTGCTGACGGACGGTGCGGGAGCGACCTG
GCAAATTGCCGATCAACTCGCTCAATGGATTGCTCGCCTGATTATGCGGTTTGACGGTTATTGGCTGACGGTCAGCGAAA
AAACAGGTTGGATTTTGACCGCACTTTTAACGCTATGCCTGTTGATGTTTATTCGTCGGCTTTATCGTGAACTTGCGCAA
CCGGCTCCGTCGTTGCCGTCGCATACCCCTTCCTTAGGCGGATTCTCTTTATTTTCCGAAAATAAACCGGCGGAGCTGTC
GGGAATCGTTATCGGTTGCCTGTTATTGCTTTCGTTGTGCGGCGGTCGTTTGGCATATTTATGGTTACAAGAACCGGATT
GGCGGGTGGAAACGTTGGATGTGGGACAAGGGCTGGCAACCTTGATTGTGAAAAATCAACGCGCCGTTTTGTATGATACC
GGTGTGGCTTGGGAAGGCGGCTCCATGGCGGAAATTGAGATCCTGCCTTATTTGCAACGGCAAGGGATTGTGCCGGAGCA
GTTGATTTTAAGTCACGACGATAAAGATCATGCGGGTGGCGCACGGGTGATTTTACGGACTTATCCCGACATTGAACTGA
TTACGCCGTCACACAAAAACTACGGTAAAACCGACCGCACTTTTTGTGTTAAGGGACTGAACTGGCATTGGCAAGGTTTG
ACATTTGAGGCGTTATCACCGGCGGAAATCGTACCGCGTGCGGAAAACGGCGATTCTTGTATTATACGGGTTTCCGACGG
TATTCACCGCGTTTTGTTGACGGGTGATGCGGATGTGGCGGCAGAAAATAGGATTATTGATCGGTTAGGGAAAATCAATG
TGCTGCAGGTGGGGCATCACGGCAGTAAAACCTCTACGGGCAGTCGTTTGGTGCGGCAAATCCGACCGGATATCGCATTG
ATTTCAAGCGGACGTTGGAATCCTTGGCATTTCCCGCATCCGTCGGTGACGGAACGTTTGATTCGTGTGCAAAGTGCGGT
GAAAAATACGGCGGTTTCGGGACAGATTTCCGTTCGTTTCCATGGCGGGAAGATGGCGCTGGAAACCGTGAGAACCGATT
TTTCGCCCTGGTATCGTGGATTTATTGGCGAAAGTACGAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(540-724)

Competence protein (Competence)

(203-473)

Domain of unknown function (DUF4131) (DUF4131)

(30-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.549

97.205

0.511

Multiple sequence alignment