Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   C5Y81_RS02545 Genome accession   NZ_CP028470
Coordinates   529381..529950 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT4-R     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 524381..534950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y81_RS02520 (C5Y81_02520) cysE 525594..526241 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  C5Y81_RS02525 (C5Y81_02525) cysS 526225..527625 (+) 1401 WP_052997678.1 cysteine--tRNA ligase -
  C5Y81_RS02530 (C5Y81_02530) - 527618..528022 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  C5Y81_RS02535 (C5Y81_02535) rlmB 528030..528776 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C5Y81_RS02540 (C5Y81_02540) - 528776..529300 (+) 525 WP_000664732.1 NYN domain-containing protein -
  C5Y81_RS02545 (C5Y81_02545) sigH 529381..529950 (+) 570 WP_000872873.1 RNA polymerase sigma factor Regulator
  C5Y81_RS02550 (C5Y81_02550) rpmG 530065..530208 (+) 144 WP_078064074.1 50S ribosomal protein L33 -
  C5Y81_RS02555 (C5Y81_02555) secE 530264..530446 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  C5Y81_RS02560 (C5Y81_02560) nusG 530459..531007 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  C5Y81_RS02565 (C5Y81_02565) rplK 531188..531610 (+) 423 WP_001085795.1 50S ribosomal protein L11 -
  C5Y81_RS02570 (C5Y81_02570) rplA 531818..532510 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  C5Y81_RS02580 (C5Y81_02580) rplJ 532782..533282 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  C5Y81_RS02585 (C5Y81_02585) rplL 533325..533693 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  C5Y81_RS02590 (C5Y81_02590) - 533868..534476 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=285186 C5Y81_RS02545 WP_000872873.1 529381..529950(+) (sigH) [Staphylococcus aureus strain IT4-R]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=285186 C5Y81_RS02545 WP_000872873.1 529381..529950(+) (sigH) [Staphylococcus aureus strain IT4-R]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment