Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EGY26_RS25505 Genome accession   NZ_CP033833
Coordinates   5259385..5259714 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FDAARGOS_571     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5254385..5264714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY26_RS25485 (EGY26_25405) - 5254621..5255325 (-) 705 WP_021702559.1 ABC transporter ATP-binding protein -
  EGY26_RS25490 (EGY26_25410) - 5255322..5256098 (-) 777 WP_058127945.1 ABC transporter permease -
  EGY26_RS25495 (EGY26_25415) - 5256262..5257242 (-) 981 WP_058127944.1 IS5 family transposase -
  EGY26_RS25500 (EGY26_25420) - 5257761..5258747 (-) 987 WP_058127943.1 IS5 family transposase -
  EGY26_RS25505 (EGY26_25425) comEA/comE1 5259385..5259714 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  EGY26_RS25515 (EGY26_25435) - 5259931..5261127 (-) 1197 WP_003091428.1 amino acid aminotransferase -
  EGY26_RS25520 (EGY26_25440) uvrB 5261315..5263327 (+) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=285149 EGY26_RS25505 WP_003091430.1 5259385..5259714(+) (comEA/comE1) [Pseudomonas aeruginosa strain FDAARGOS_571]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=285149 EGY26_RS25505 WP_003091430.1 5259385..5259714(+) (comEA/comE1) [Pseudomonas aeruginosa strain FDAARGOS_571]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment