Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APP7_RS10740 Genome accession   NC_010939
Coordinates   2259628..2260290 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae serovar 7 str. AP76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2254628..2265290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APP7_RS10705 (APP7_2051) - 2255066..2255626 (-) 561 WP_005613491.1 TIGR00730 family Rossman fold protein -
  APP7_RS10710 (APP7_2052) - 2255689..2256012 (+) 324 WP_005602867.1 MazG-like family protein -
  APP7_RS10715 (APP7_2053) crp 2256061..2256735 (-) 675 WP_005599747.1 cAMP-activated global transcriptional regulator CRP Regulator
  APP7_RS10720 (APP7_2054) - 2256813..2257031 (-) 219 WP_005599748.1 YheU family protein -
  APP7_RS10725 (APP7_2055) slmA 2257037..2257645 (-) 609 WP_005620316.1 nucleoid occlusion factor SlmA -
  APP7_RS10730 (APP7_2056) dut 2257751..2258206 (-) 456 WP_005599752.1 dUTP diphosphatase -
  APP7_RS10735 (APP7_2057) coaBC 2258215..2259420 (-) 1206 WP_005602882.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  APP7_RS10740 (APP7_2058) radC 2259628..2260290 (+) 663 WP_005599756.1 DNA repair protein RadC Machinery gene
  APP7_RS10745 (APP7_2059) rpmB 2260459..2260695 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  APP7_RS10750 (APP7_2060) rpmG 2260707..2260877 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  APP7_RS10760 (APP7_2061) - 2261242..2261802 (+) 561 WP_005599767.1 hypothetical protein -
  APP7_RS10765 (APP7_2062) - 2262083..2263447 (+) 1365 WP_005599768.1 diaminobutyrate--2-oxoglutarate transaminase -
  APP7_RS10770 (APP7_2063) ddc 2263576..2265111 (+) 1536 WP_012478615.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=28513 APP7_RS10740 WP_005599756.1 2259628..2260290(+) (radC) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=28513 APP7_RS10740 WP_005599756.1 2259628..2260290(+) (radC) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAATTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623

Multiple sequence alignment