Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DA378_RS11675 Genome accession   NZ_CP028440
Coordinates   2404022..2404540 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain J7-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2399022..2409540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS11655 - 2400100..2400306 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  DA378_RS11660 - 2400353..2402356 (+) 2004 WP_004392974.1 molybdopterin-dependent oxidoreductase -
  DA378_RS11665 ychF 2402483..2403583 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  DA378_RS11670 rpsF 2403695..2403982 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  DA378_RS11675 ssbA 2404022..2404540 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  DA378_RS11680 rpsR 2404584..2404823 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  DA378_RS11685 - 2405016..2405597 (+) 582 WP_004392986.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  DA378_RS11690 - 2405594..2406151 (+) 558 WP_004392989.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DA378_RS11695 xth 2406148..2406906 (+) 759 WP_004392994.1 exodeoxyribonuclease III -
  DA378_RS11700 - 2406969..2407907 (+) 939 WP_004392996.1 LacI family DNA-binding transcriptional regulator -
  DA378_RS11705 - 2407964..2408344 (+) 381 WP_004392999.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=285007 DA378_RS11675 WP_004392979.1 2404022..2404540(+) (ssbA) [Bacillus velezensis strain J7-1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=285007 DA378_RS11675 WP_004392979.1 2404022..2404540(+) (ssbA) [Bacillus velezensis strain J7-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGTTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment