Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DA378_RS11570 Genome accession   NZ_CP028440
Coordinates   2383398..2384510 (-) Length   370 a.a.
NCBI ID   WP_004392909.1    Uniprot ID   -
Organism   Bacillus velezensis strain J7-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2378398..2389510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS11555 gyrA 2378484..2380943 (-) 2460 WP_004392898.1 DNA gyrase subunit A -
  DA378_RS11560 gyrB 2381159..2383075 (-) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DA378_RS11565 remB 2383135..2383380 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  DA378_RS11570 recF 2383398..2384510 (-) 1113 WP_004392909.1 DNA replication/repair protein RecF Machinery gene
  DA378_RS11575 rlbA 2384526..2384741 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  DA378_RS11580 dnaN 2384876..2386012 (-) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  DA378_RS11585 dnaA 2386197..2387537 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  DA378_RS11590 rpmH 2388158..2388292 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  DA378_RS11595 rnpA 2388447..2388797 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42455.38 Da        Isoelectric Point: 7.0882

>NTDB_id=285006 DA378_RS11570 WP_004392909.1 2383398..2384510(-) (recF) [Bacillus velezensis strain J7-1]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGNPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=285006 DA378_RS11570 WP_004392909.1 2383398..2384510(-) (recF) [Bacillus velezensis strain J7-1]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAACCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941

Multiple sequence alignment