Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   DA378_RS05690 Genome accession   NZ_CP028440
Coordinates   1278218..1279171 (-) Length   317 a.a.
NCBI ID   WP_003155063.1    Uniprot ID   -
Organism   Bacillus velezensis strain J7-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273218..1284171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS05660 - 1273370..1274356 (-) 987 WP_003155054.1 ABC transporter ATP-binding protein -
  DA378_RS05665 - 1274530..1275315 (-) 786 WP_003155055.1 DUF2268 domain-containing protein -
  DA378_RS05670 fabF 1275399..1276637 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  DA378_RS05675 - 1276660..1277598 (-) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  DA378_RS05680 - 1277766..1277984 (+) 219 WP_003155059.1 hypothetical protein -
  DA378_RS05685 comZ 1278014..1278205 (-) 192 WP_003155061.1 ComZ family protein Regulator
  DA378_RS05690 med 1278218..1279171 (-) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  DA378_RS05695 - 1279261..1279827 (-) 567 WP_003155065.1 hypothetical protein -
  DA378_RS05700 - 1279910..1280644 (-) 735 WP_003155067.1 hypothetical protein -
  DA378_RS05710 - 1280905..1281090 (+) 186 WP_003155069.1 YjzD family protein -
  DA378_RS05715 - 1281126..1281305 (-) 180 WP_003155070.1 YjzC family protein -
  DA378_RS05720 argF 1281381..1282352 (-) 972 WP_003155071.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35345.94 Da        Isoelectric Point: 4.5594

>NTDB_id=284986 DA378_RS05690 WP_003155063.1 1278218..1279171(-) (med) [Bacillus velezensis strain J7-1]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=284986 DA378_RS05690 WP_003155063.1 1278218..1279171(-) (med) [Bacillus velezensis strain J7-1]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCTTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785

Multiple sequence alignment