Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   EGY23_RS03505 Genome accession   NZ_CP033832
Coordinates   751079..751603 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain FDAARGOS_505     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746079..756603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY23_RS03490 (EGY23_03480) aroB 747195..748301 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  EGY23_RS03495 (EGY23_03485) aroK 748351..748869 (-) 519 WP_123789195.1 shikimate kinase AroK -
  EGY23_RS03500 (EGY23_03490) pilQ 748881..751025 (-) 2145 WP_023083249.1 type 4a pilus secretin PilQ Machinery gene
  EGY23_RS03505 (EGY23_03495) comL/pilP 751079..751603 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EGY23_RS03510 (EGY23_03500) pilO 751600..752223 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGY23_RS03515 (EGY23_03505) pilN 752220..752816 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  EGY23_RS03520 (EGY23_03510) pilM 752816..753880 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  EGY23_RS03525 (EGY23_03515) - 754065..756536 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=284979 EGY23_RS03505 WP_003095836.1 751079..751603(-) (comL/pilP) [Pseudomonas aeruginosa strain FDAARGOS_505]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=284979 EGY23_RS03505 WP_003095836.1 751079..751603(-) (comL/pilP) [Pseudomonas aeruginosa strain FDAARGOS_505]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362