Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EGX82_RS01570 Genome accession   NZ_CP033822
Coordinates   328192..328788 (-) Length   198 a.a.
NCBI ID   WP_000966735.1    Uniprot ID   Q3K1U0
Organism   Streptococcus agalactiae strain FDAARGOS_512     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 323192..333788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX82_RS01550 (EGX82_01550) - 323269..323955 (-) 687 WP_000569007.1 YwaF family protein -
  EGX82_RS01555 (EGX82_01555) - 324084..325304 (-) 1221 WP_000793484.1 OFA family MFS transporter -
  EGX82_RS01560 (EGX82_01560) murF 325491..326858 (-) 1368 WP_000777521.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  EGX82_RS01565 (EGX82_01565) - 327005..328051 (-) 1047 WP_000032513.1 D-alanine--D-alanine ligase -
  EGX82_RS01570 (EGX82_01570) recR 328192..328788 (-) 597 WP_000966735.1 recombination mediator RecR Machinery gene
  EGX82_RS01575 (EGX82_01575) pbp2b 328803..330848 (-) 2046 WP_000934660.1 penicillin-binding protein PBP2B -
  EGX82_RS01580 (EGX82_01580) - 330977..331669 (-) 693 WP_000240135.1 phosphoglycerate mutase -
  EGX82_RS01585 (EGX82_01585) tpiA 331846..332604 (-) 759 WP_000087883.1 triose-phosphate isomerase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21619.82 Da        Isoelectric Point: 4.5632

>NTDB_id=284872 EGX82_RS01570 WP_000966735.1 328192..328788(-) (recR) [Streptococcus agalactiae strain FDAARGOS_512]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDDDPCLICTDKTRDQS
VILVVEDSKDVSAMEKIQEYNGLYHVLHGLISPMNGISPDDINLKSLITRLMDGQVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=284872 EGX82_RS01570 WP_000966735.1 328192..328788(-) (recR) [Streptococcus agalactiae strain FDAARGOS_512]
ATGCTTTACCCAACACCAATTGCTAAATTGATTGACAGCTTTTCAAAATTACCGGGTATAGGTACTAAAACAGCAACACG
TTTAGCTTTTTACACCATTGGTATGAGTGATGAAGATGTTAATGAATTTGCTAAGAATTTATTAGCTGCTAAGCGGGAAT
TAACCTATTGTTCTGTTTGTGGTAATTTGACTGATGATGATCCTTGCTTAATTTGTACAGATAAGACGCGTGACCAGTCT
GTTATCTTGGTTGTTGAAGATAGCAAAGATGTGTCAGCTATGGAAAAAATTCAAGAGTATAATGGTTTGTATCATGTCTT
ACATGGCTTAATTTCACCTATGAATGGTATTAGCCCTGATGACATTAATTTGAAAAGTTTAATTACTCGATTGATGGATG
GTCAGGTGACAGAAGTTATTGTTGCTACCAATGCGACTGCTGATGGTGAAGCTACATCAATGTATATTTCACGAGTCTTA
AAACCAGCTGGTATCAAAGTGACACGATTAGCGAGAGGTTTAGCTGTTGGTTCAGATATCGAATATGCAGATGAAGTAAC
CTTGCTTCGAGCAATCGAAAATCGTACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485