Detailed information NTG0284809

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SPWS13_RS14175
• Genome accession: NZ_CP028435
• Coordinates: 3117546..3118472 (-)
• Length: 308 a.a.
• NCBI ID: WP_025008132.1
• Uniprot ID: -
• Organism: Shewanella putrefaciens strain WS13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3112546..3123472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPWS13_RS14145 (SPWS13_3350)	-	3112758..3113684 (+)	927	WP_061783194.1	exopolyphosphatase	-
SPWS13_RS14150 (SPWS13_3351)	-	3113952..3114488 (-)	537	WP_011787896.1	thioredoxin family protein	-
SPWS13_RS14155 (SPWS13_3352)	mutT	3115037..3115440 (-)	404	Protein_2748	8-oxo-dGTP diphosphatase MutT	-
SPWS13_RS14160 (SPWS13_3353)	yacG	3115492..3115701 (-)	210	WP_011920039.1	DNA gyrase inhibitor YacG	-
SPWS13_RS14165 (SPWS13_3354)	zapD	3115859..3116593 (-)	735	WP_011787899.1	cell division protein ZapD	-
SPWS13_RS14170 (SPWS13_3355)	coaE	3116586..3117203 (-)	618	WP_128090233.1	dephospho-CoA kinase	-
SPWS13_RS14175 (SPWS13_3356)	pilD	3117546..3118472 (-)	927	WP_025008132.1	A24 family peptidase	Machinery gene
SPWS13_RS14180 (SPWS13_3357)	pilC	3118638..3119903 (-)	1266	WP_011787902.1	type II secretion system F family protein	Machinery gene
SPWS13_RS14185 (SPWS13_3359)	pilB	3120285..3121994 (-)	1710	WP_061783195.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SPWS13_RS14190 (SPWS13_3360)	-	3122069..3122542 (-)	474	WP_025008133.1	type IV pilin protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34356.68 Da
• Isoelectric Point: 6.5934

>NTDB_id=284809 SPWS13_RS14175 WP_025008132.1 3117546..3118472(-) (pilD) [Shewanella putrefaciens strain WS13]
MTEFITLLGQSFEQSPWLFVTLSFIFAATIGSFLNVVIHRLPIMMKREWQQECNQYLQEYHADIVNQVGIDRLNKPIDSY
PEKYNIVVPGSACPQCKTAIKPWHNLPVLGWLILRGKCAACHAPISTRYPIIELITGLLIAALAWHFGPSWQFVFASLLT
FVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAAAGYLSLWSIFWVFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGIGMIISKRNQMDNPIPFGPYIAAAGWIALVWGNTIIDWYLGTL

Nucleotide

• Length: 927 bp

>NTDB_id=284809 SPWS13_RS14175 WP_025008132.1 3117546..3118472(-) (pilD) [Shewanella putrefaciens strain WS13]
ATGACTGAATTTATCACTTTATTAGGCCAATCTTTTGAACAGAGTCCTTGGCTCTTCGTCACCTTAAGCTTTATTTTTGC
CGCGACTATTGGCAGTTTTCTGAATGTGGTCATCCACCGACTCCCTATCATGATGAAGCGTGAATGGCAGCAGGAATGTA
ATCAATATTTACAGGAATACCATGCGGATATCGTTAACCAAGTCGGTATCGATAGGCTTAATAAACCCATAGATAGCTAT
CCCGAAAAGTACAATATTGTGGTGCCAGGCTCAGCTTGCCCTCAGTGTAAAACCGCCATCAAACCTTGGCATAATTTGCC
AGTTCTCGGTTGGTTAATCCTTAGGGGGAAATGCGCCGCCTGTCATGCACCTATCTCGACCCGTTATCCGATTATTGAAT
TAATCACAGGTTTACTGATCGCAGCTCTAGCTTGGCATTTTGGCCCCAGTTGGCAATTTGTTTTTGCCTCTTTACTCACC
TTTGTATTGATTGCGCTGACTGGTATAGATCTGGATGAAATGTTATTACCGGATCAGTTAACACTGCCCCTACTGTGGCT
TGGGCTATTACTCAATTTACACCATACCTTTGCTAGCCCAACGGATGCCATTATCGGTGCAGCCGCAGGCTATTTAAGCC
TATGGTCAATTTTCTGGGTGTTTAAGTTACTCACAGGTAAAGAAGGTATGGGCTATGGCGACTTTAAACTGTTGGCCGTT
TTTGGTGCTTGGCTTGGCTGGCAAATGTTGCCACTGGTGATTTTACTCTCCTCATTAGTGGGTGCTGTTGTGGGCATTGG
CATGATTATCAGCAAACGTAATCAGATGGATAACCCTATTCCCTTTGGCCCTTATATTGCCGCCGCAGGCTGGATTGCAC
TGGTTTGGGGAAACACTATCATCGACTGGTATTTAGGGACACTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (159-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.156	97.727	0.519
pilD	Vibrio campbellii strain DS40M4	51.333	97.403	0.5
pilD	Acinetobacter baumannii D1279779	48.789	93.831	0.458
pilD	Acinetobacter nosocomialis M2	48.789	93.831	0.458
pilD	Neisseria gonorrhoeae MS11	43.448	94.156	0.409