Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPWS13_RS09115 Genome accession   NZ_CP028435
Coordinates   2016996..2017706 (-) Length   236 a.a.
NCBI ID   WP_128090184.1    Uniprot ID   -
Organism   Shewanella putrefaciens strain WS13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2011996..2022706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPWS13_RS09100 (SPWS13_2153) - 2012320..2013465 (-) 1146 WP_011918636.1 HDOD domain-containing protein -
  SPWS13_RS09105 (SPWS13_2154) - 2013653..2016133 (-) 2481 WP_061783036.1 prolyl oligopeptidase family serine peptidase -
  SPWS13_RS09110 (SPWS13_2155) - 2016296..2016877 (-) 582 Protein_1768 aminodeoxychorismate/anthranilate synthase component II -
  SPWS13_RS09115 (SPWS13_2156) ssb 2016996..2017706 (-) 711 WP_128090184.1 single-stranded DNA-binding protein Machinery gene
  SPWS13_RS09120 (SPWS13_2157) - 2017814..2019181 (-) 1368 WP_061783035.1 MFS transporter -
  SPWS13_RS09125 (SPWS13_2159) uvrA 2019580..2022456 (+) 2877 WP_061783034.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25375.94 Da        Isoelectric Point: 5.2341

>NTDB_id=284805 SPWS13_RS09115 WP_128090184.1 2016996..2017706(-) (ssb) [Shewanella putrefaciens strain WS13]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAPPAPAQQQGYGQPQAQQSQQGGYAPKPQAAPAPAYQALAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 711 bp        

>NTDB_id=284805 SPWS13_RS09115 WP_128090184.1 2016996..2017706(-) (ssb) [Shewanella putrefaciens strain WS13]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCAAACATTACAGTAGCGACTAGCGAATCGTGGAAAGACCAACAGGGTCAACAGCAAGAGCGCACCGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATATTTACGTAAAGGTTCACAGGTTTATCTTGAA
GGTAAACTGCAAACTCGTAAGTGGAAAGACCAAAGCGGTCAAGATCGCTACAGCACTGAAGTGGTTATCGATCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGTCAAGCACAAGGTGCGCCAATGGGCGGCGGTATGCCACAAAATG
CAGGCTATCAGTCAGCGCCTCAGCAAGCCGCTCCTGCACAAAATCAGTATGCGCCAGCGCCTCAAGCTGCACCTGCTTAC
CAAGCCCCTGCGCAGCAACAATATGCTCCGCCAGCACCTGCTCAGCAGCAAGGTTATGGTCAGCCACAGGCTCAACAATC
ACAACAAGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCTGCGCCAGCTTATCAAGCGCTTGCAGCACCGGCACAGCGTC
CTGCGCCACAACCACAACAGAATTTTACGCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.143

74.153

0.483
  ssb Glaesserella parasuis strain SC1401

45.726

99.153

0.453

Multiple sequence alignment