Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   APP7_RS01475 Genome accession   NC_010939
Coordinates   320868..321473 (+) Length   201 a.a.
NCBI ID   WP_005607004.1    Uniprot ID   B3H0C5
Organism   Actinobacillus pleuropneumoniae serovar 7 str. AP76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315868..326473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APP7_RS01455 (APP7_0282) potA 317462..318577 (+) 1116 WP_005606999.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  APP7_RS01460 (APP7_0283) potB 318564..319430 (+) 867 WP_005603539.1 spermidine/putrescine ABC transporter permease PotB -
  APP7_RS01465 (APP7_0284) potC 319430..320197 (+) 768 WP_012478315.1 spermidine/putrescine ABC transporter permease PotC -
  APP7_RS01470 - 320343..320867 (+) 525 WP_005619921.1 YniB family protein -
  APP7_RS01475 (APP7_0285) ruvA 320868..321473 (+) 606 WP_005607004.1 Holliday junction branch migration protein RuvA Machinery gene
  APP7_RS01480 ruvB 321492..322495 (+) 1004 Protein_285 Holliday junction branch migration DNA helicase RuvB -
  APP7_RS01485 (APP7_0288) ubiG 322552..323256 (-) 705 WP_005616730.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  APP7_RS01490 (APP7_0289) gyrA 323436..326126 (+) 2691 WP_005616732.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22102.64 Da        Isoelectric Point: 6.8546

>NTDB_id=28473 APP7_RS01475 WP_005607004.1 320868..321473(+) (ruvA) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQIGEEATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNG
VGPKLALAILSAMSVSQFANAVEHEELAKLTKIPGIGRKTAERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDPADE
ARDALVALGYKLADAEKMIKKVNKAGATSEQLIREALKASL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=28473 APP7_RS01475 WP_005607004.1 320868..321473(+) (ruvA) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
ATGATCGGAAGATTACATGGTAAAATTATTGAAAAACAACCACCTGAAATGGTAATTGATGTTCAAGGTGTCGGATATGA
AGTGCTATTGCCGATGACGAGCTTTTACAGTTTGCCGCAAATCGGTGAAGAAGCCACAATCTTTACGCATTTAGTCGTAC
GTGAAGATGCGCATTTATTATTTGGTTTTGCACAAAAGCAAGACAGAACGTTATTTCGTGAATTAATTAAAACCAACGGT
GTCGGGCCTAAATTAGCCCTTGCGATTTTATCGGCGATGTCGGTTTCACAATTTGCGAATGCGGTAGAACATGAAGAATT
AGCCAAATTAACTAAAATCCCGGGCATTGGGCGTAAGACAGCCGAGCGTTTATTAGTAGAACTCAAAGGCAAATTCAAAG
GTGTGGCACAAAGTGATTTCTTTGAAGAACATTCGGTTGAAACGATTGTTGCAACACATTCACACGATCCGGCAGATGAA
GCCCGTGATGCTTTAGTAGCGTTAGGCTATAAACTCGCTGATGCTGAGAAGATGATTAAGAAAGTGAATAAAGCGGGTGC
AACCAGCGAACAATTAATTCGTGAAGCATTAAAAGCCTCTCTTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(157-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3H0C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.19

100

0.378
  ruvA Streptococcus pneumoniae TIGR4

36.869

98.507

0.363