Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SK637_RS07175 Genome accession   NZ_CP028415
Coordinates   1405980..1407212 (-) Length   410 a.a.
NCBI ID   WP_033689156.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400980..1412212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS07150 (SK637_01395) whiA 1402170..1403081 (-) 912 WP_033689154.1 DNA-binding protein WhiA -
  SK637_RS07155 (SK637_01396) - 1403078..1404055 (-) 978 WP_001231075.1 YvcK family protein -
  SK637_RS07160 (SK637_01397) rapZ 1404052..1404942 (-) 891 WP_033689155.1 RNase adapter RapZ -
  SK637_RS07165 (SK637_01398) - 1404994..1405374 (-) 381 WP_001140420.1 RidA family protein -
  SK637_RS07170 (SK637_01399) yihA 1405384..1405971 (-) 588 WP_000422595.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SK637_RS07175 (SK637_01400) clpX 1405980..1407212 (-) 1233 WP_033689156.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SK637_RS09915 (SK637_01401) - 1407249..1407419 (-) 171 WP_000442260.1 hypothetical protein -
  SK637_RS07185 (SK637_01402) - 1407419..1407925 (-) 507 WP_033689157.1 dihydrofolate reductase -
  SK637_RS07190 (SK637_01403) - 1408056..1408574 (-) 519 WP_033689158.1 Dps family protein -
  SK637_RS07195 (SK637_01404) lytC 1408807..1410417 (-) 1611 WP_080710548.1 choline binding-anchored murein hydrolase LytC -
  SK637_RS07200 (SK637_01405) tpiA 1410451..1411209 (-) 759 WP_033689160.1 triose-phosphate isomerase -
  SK637_RS07205 (SK637_01406) - 1411307..1411984 (-) 678 WP_033689161.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45697.16 Da        Isoelectric Point: 4.4240

>NTDB_id=284719 SK637_RS07175 WP_033689156.1 1405980..1407212(-) (clpX) [Streptococcus mitis strain SK637]
MPTNRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQASDFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=284719 SK637_RS07175 WP_033689156.1 1405980..1407212(-) (clpX) [Streptococcus mitis strain SK637]
ATGCCTACAAATAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCAGGTAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTAGCCCAGGAGATCATTCGTGAGGAGTTGGCGGAAGAAG
TCTTGGCAGACTTGTCTGAGGTACCAAAACCAATCGAACTTCTCCATATCTTGAATCACTATGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCAGTTTACAATCACTACAAACGTATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACATTCCTTGCCCAGACCTTGGCTA
AGAGTTTGAATGTGCCTTTTGCGATCGCAGATGCGACAGCTCTGACGGAGGCTGGTTATGTAGGTGAGGATGTGGAAAAT
ATTCTCCTCAAACTCTTGCAGGCTTCTGACTTTAACATTGAACGTGCAGAGCGTGGGATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGAGTGCAACAAGCGCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGTAAGCATCCACAACAAGAGATGATTCAAGTAGATACC
AAAAACATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATTGAAGAAATCGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAGGCGATTGACGAAAACAGCTCTTACATGCAGGAAATCATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGTTTGCCTGTCTTTGCTGCTCTTGAACAGTTGACAGTAGATGATTTGGTTCGT
ATCTTGAAAGAGCCAAGAAATGCTTTGGTCAAACAATACCAAACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGA
CGACGAAGCTCTTCAAGAGATTGCCAATAAGGCTATTGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCCATCATCGAAG
AAACCATGCTAGACGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCTTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment