Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SK637_RS05415 Genome accession   NZ_CP028415
Coordinates   1038453..1039262 (-) Length   269 a.a.
NCBI ID   WP_033688866.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033453..1044262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS05400 (SK637_01054) - 1035381..1037099 (+) 1719 WP_033688864.1 phospho-sugar mutase -
  SK637_RS05405 (SK637_01055) - 1037211..1037558 (+) 348 WP_023944304.1 thioredoxin -
  SK637_RS05410 (SK637_01056) - 1037594..1038367 (-) 774 WP_033688865.1 potassium channel family protein -
  SK637_RS05415 (SK637_01057) vicX 1038453..1039262 (-) 810 WP_033688866.1 MBL fold metallo-hydrolase Regulator
  SK637_RS05420 (SK637_01058) micB 1039255..1040613 (-) 1359 WP_033688867.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SK637_RS05425 (SK637_01059) micA 1040606..1041313 (-) 708 WP_033688868.1 response regulator YycF Regulator
  SK637_RS05430 (SK637_01060) mutY 1041369..1042544 (-) 1176 WP_033688869.1 A/G-specific adenine glycosylase -
  SK637_RS05435 (SK637_01061) pta 1042778..1043752 (-) 975 WP_033688870.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29900.91 Da        Isoelectric Point: 6.1738

>NTDB_id=284710 SK637_RS05415 WP_033688866.1 1038453..1039262(-) (vicX) [Streptococcus mitis strain SK637]
MSEIGFKYSILASGSSGNSFYLETPKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRAMGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=284710 SK637_RS05415 WP_033688866.1 1038453..1039262(-) (vicX) [Streptococcus mitis strain SK637]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGATCCAGTGGAAATTCCTTTTATCTGGAAACCCCAAAAAA
GAAACTTTTAGTGGATGCAGGCTTGTCGGGCAAGAAAATTACCAGCTTACTTGCTGAAATTAATCGCAAGCCAGAAGATT
TGGATGCTATCCTGATTACGCATGAACATTCTGACCATATTCATGGAGTAGGTGTTTTAGCTCGCAAGTATGGTATGGAT
TTGTATGCCAATGAAAAGACCTGGCAGGCTATGGAAAATAGCAAGTATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
CTTTGAAATGGGCAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTGAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTTAGTGACCGTATGGCAGGG
ATTGTCGAGAATGCAGATGGCTATCTTATAGAGTCCAACCATGATGTAGAGATTTTGCGAGCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGATCTCGGTCACCTTTCTAACGAAGACGGTGCTGAGGCCATGATTCGTGCAATGGGAA
ATCGAACTAAGAAAATCTATCTTGGCCATCTATCCAAGGAAAACAATATTAAGGAGTTGGCTCACATGACCATGGTCAAC
CAGCTAGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACTGCAACACCATTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77

Multiple sequence alignment