Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SK637_RS01860 Genome accession   NZ_CP028415
Coordinates   355341..356072 (+) Length   243 a.a.
NCBI ID   WP_033688149.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 350341..361072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS01835 (SK637_00359) - 351982..352428 (+) 447 WP_033688145.1 hypothetical protein -
  SK637_RS01840 (SK637_00360) dnaJ 352632..353768 (+) 1137 WP_033679702.1 molecular chaperone DnaJ -
  SK637_RS01845 (SK637_00361) - 353846..354505 (-) 660 WP_033688146.1 hypothetical protein -
  SK637_RS01850 (SK637_00362) - 354566..354853 (-) 288 WP_033688147.1 hypothetical protein -
  SK637_RS01855 (SK637_00363) - 354863..355273 (-) 411 WP_033688148.1 HIT family protein -
  SK637_RS01860 (SK637_00364) pptA 355341..356072 (+) 732 WP_033688149.1 ABC transporter ATP-binding protein Regulator
  SK637_RS01865 (SK637_00365) - 356069..357118 (+) 1050 WP_033688150.1 ABC transporter permease -
  SK637_RS01870 (SK637_00366) - 357181..357510 (-) 330 WP_004261043.1 hypothetical protein -
  SK637_RS01875 (SK637_00367) comE/blpR 357806..358543 (+) 738 WP_033688152.1 response regulator transcription factor Regulator
  SK637_RS01880 (SK637_00368) - 358557..359906 (+) 1350 WP_033688153.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27046.53 Da        Isoelectric Point: 4.8698

>NTDB_id=284693 SK637_RS01860 WP_033688149.1 355341..356072(+) (pptA) [Streptococcus mitis strain SK637]
MLEIKNLTGGYVHAPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQGDATNYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKMAFERVESLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=284693 SK637_RS01860 WP_033688149.1 355341..356072(+) (pptA) [Streptococcus mitis strain SK637]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTCCATGCACCTGTCTTGAAAGATGTATCCTTTACTGTTGAAAGTGG
GCAGCTGGTCGGTCTGATTGGTCTCAATGGTGCTGGGAAATCGACGACTATTAATGAAATTATCGGTCTGTTGACACCTT
ATAGTGGCTCCATCAATATCAATGGTCTGACCCTGCAAGGAGATGCGACTAACTACCGTAAGCAAATTGGCTACATTCCT
GAGACACCTAGTCTGTATGAGGAATTGACTCTCAGAGAGCATATTGAAACAGTGGCTATGGCTTATGGAATAGAGCAGAA
AATGGCTTTTGAGCGAGTAGAATCTTTGTTGAAAATGTTCCGTTTGGATCAGAAATTAGACTGGTTTCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTTATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTGCGGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAAGGGGAAGTGCGTGCTAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment