Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CLIM_RS10720 Genome accession   NC_010803
Coordinates   2352038..2353090 (-) Length   350 a.a.
NCBI ID   WP_012467026.1    Uniprot ID   B3EGP4
Organism   Chlorobium limicola DSM 245     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2347038..2358090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLIM_RS10695 (Clim_2128) alr 2347278..2348402 (+) 1125 WP_012467021.1 alanine racemase -
  CLIM_RS10700 (Clim_2129) - 2348424..2348975 (+) 552 WP_012467022.1 helix-hairpin-helix domain-containing protein -
  CLIM_RS10705 (Clim_2130) - 2349129..2349836 (+) 708 WP_150081692.1 hypothetical protein -
  CLIM_RS10710 (Clim_2131) - 2349944..2350972 (-) 1029 WP_012467024.1 aspartate-semialdehyde dehydrogenase -
  CLIM_RS10715 (Clim_2132) dusB 2350992..2352035 (-) 1044 WP_012467025.1 tRNA dihydrouridine synthase DusB -
  CLIM_RS10720 (Clim_2133) recA 2352038..2353090 (-) 1053 WP_012467026.1 recombinase RecA Machinery gene
  CLIM_RS10725 (Clim_2134) - 2353128..2354117 (-) 990 WP_012467027.1 NAD-dependent epimerase/dehydratase family protein -
  CLIM_RS10730 (Clim_2136) - 2354324..2355562 (+) 1239 WP_012467029.1 pitrilysin family protein -
  CLIM_RS10735 (Clim_2137) tig 2355662..2356945 (+) 1284 WP_012467030.1 trigger factor -
  CLIM_RS10740 (Clim_2138) acpS 2357056..2357436 (-) 381 WP_012467031.1 holo-ACP synthase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37340.93 Da        Isoelectric Point: 5.8812

>NTDB_id=28458 CLIM_RS10720 WP_012467026.1 2352038..2353090(-) (recA) [Chlorobium limicola DSM 245]
MNMDTNDKEKKNEGIDPAKLKQLNLAVDALEKQFGKGAIMRLGDGSAVMQVQSISTGSMTLDFALGVGGLPRGRVAEIYG
PESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPSYARKLGVDINALLISQPESGEQALTIVETLVRSGAVDVVVVDSV
AALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAISKSSAVCIFINQLRDKIGVMYGSPETTTGGKALKFYASIRLDIR
KIAQIKDGDEIVGNRTKVKVVKNKVAPPFKSAEFDILYGEGISAMGELVDLAVEFGVVKKSGSWFSFGQEKLGQGRESAK
KALREDHALFQQVYIQVRELMTGTAEIING

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=28458 CLIM_RS10720 WP_012467026.1 2352038..2353090(-) (recA) [Chlorobium limicola DSM 245]
ATGAACATGGATACTAACGATAAAGAGAAAAAAAACGAAGGGATCGATCCGGCAAAGCTCAAGCAGCTGAACCTTGCGGT
TGATGCCCTTGAAAAACAGTTCGGCAAGGGAGCTATCATGCGATTGGGCGATGGTTCAGCTGTCATGCAGGTGCAGTCTA
TTTCTACCGGTTCCATGACCCTTGACTTCGCACTCGGAGTGGGTGGTCTGCCGCGGGGCCGGGTTGCAGAAATCTACGGG
CCTGAATCGTCGGGAAAAACAACCCTTGCCCTGCATGTTATTGCCGAGGCTCAGAAAGAGGGTGGTATAGCGGCCATTGT
CGATGCCGAACATGCTTTCGATCCGTCTTACGCACGTAAACTTGGCGTGGATATCAACGCACTGCTCATCAGTCAGCCGG
AGTCGGGCGAACAGGCGCTTACAATTGTTGAAACTCTCGTCAGAAGCGGAGCTGTTGACGTTGTCGTTGTCGATTCCGTA
GCGGCTCTCGTTCCGCAGGCTGAACTCGAAGGAGAGATGGGCGACAGTGTCGTCGGCCTCCAGGCGCGCCTTATGAGCCA
GGCCCTGCGCAAACTGACGGGCGCGATTTCAAAATCGAGTGCGGTCTGTATTTTTATCAATCAGCTTCGCGACAAGATCG
GGGTGATGTACGGTTCTCCTGAAACCACTACCGGCGGAAAAGCATTGAAATTTTATGCTTCGATACGTCTTGATATCCGC
AAAATCGCTCAGATCAAGGACGGCGATGAAATAGTCGGAAACCGTACCAAGGTGAAAGTTGTCAAAAATAAGGTCGCTCC
ACCGTTCAAGAGCGCCGAGTTCGATATTCTCTATGGTGAAGGCATTTCCGCAATGGGTGAACTGGTCGATCTGGCTGTGG
AGTTCGGCGTTGTGAAGAAATCCGGTTCATGGTTCAGTTTCGGCCAGGAAAAGCTCGGCCAGGGCAGGGAATCTGCCAAA
AAGGCGCTCCGGGAGGATCATGCGCTTTTCCAGCAGGTTTATATACAGGTGCGGGAGCTTATGACCGGTACTGCAGAAAT
TATCAATGGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B3EGP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

62.651

94.857

0.594
  recA Ralstonia pseudosolanacearum GMI1000

67.097

88.571

0.594
  recA Acinetobacter nosocomialis M2

62.349

94.857

0.591
  recA Glaesserella parasuis strain SC1401

59.593

98.286

0.586
  recA Staphylococcus aureus strain ATCC 12600

62.769

92.857

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.714

96

0.583
  recA Acinetobacter baylyi ADP1

62.462

92.857

0.58
  recA Helicobacter pylori 26695

60.597

95.714

0.58
  recA Pseudomonas stutzeri DSM 10701

62.654

92.571

0.58
  recA Helicobacter pylori strain NCTC11637

60.299

95.714

0.577
  recA Streptococcus pyogenes NZ131

59.587

96.857

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

63.407

90.571

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.28

93.714

0.574
  recA Streptococcus pneumoniae R6

62.112

92

0.571
  recA Streptococcus pneumoniae R36A

62.112

92

0.571
  recA Streptococcus pneumoniae Rx1

62.112

92

0.571
  recA Streptococcus pneumoniae D39

62.112

92

0.571
  recA Streptococcus pneumoniae TIGR4

62.112

92

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.856

93.429

0.569
  recA Vibrio cholerae strain A1552

60.856

93.429

0.569
  recA Streptococcus mitis SK321

61.491

92

0.566
  recA Streptococcus mitis NCTC 12261

61.491

92

0.566
  recA Streptococcus thermophilus LMG 18311

60.494

92.571

0.56
  recA Streptococcus thermophilus LMD-9

60.494

92.571

0.56
  recA Neisseria gonorrhoeae strain FA1090

62.701

88.857

0.557
  recA Neisseria gonorrhoeae MS11

62.701

88.857

0.557
  recA Lactococcus lactis subsp. cremoris KW2

60.559

92

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

61.392

90.286

0.554
  recA Streptococcus mutans UA159

59.938

92

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.063

90.857

0.546

Multiple sequence alignment