Detailed information
Bioinformatically predicted
Overview
| Name | recR | Type | Machinery gene |
| Locus tag | CLIM_RS04400 | Genome accession | NC_010803 |
| Coordinates | 958851..959468 (+) | Length | 205 a.a. |
| NCBI ID | WP_012465834.1 | Uniprot ID | B3EIC5 |
| Organism | Chlorobium limicola DSM 245 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 953851..964468
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLIM_RS04375 (Clim_0871) | mce | 954004..954411 (-) | 408 | WP_012465829.1 | methylmalonyl-CoA epimerase | - |
| CLIM_RS04380 (Clim_0872) | - | 954408..956459 (-) | 2052 | WP_317623580.1 | propionyl-CoA synthetase | - |
| CLIM_RS04385 (Clim_0873) | rsmA | 956603..957394 (-) | 792 | WP_012465831.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| CLIM_RS04390 (Clim_0874) | - | 957468..958448 (+) | 981 | WP_012465832.1 | transketolase family protein | - |
| CLIM_RS04395 (Clim_0875) | - | 958509..958844 (+) | 336 | WP_012465833.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CLIM_RS04400 (Clim_0876) | recR | 958851..959468 (+) | 618 | WP_012465834.1 | recombination mediator RecR | Machinery gene |
| CLIM_RS04405 (Clim_0877) | - | 959522..960904 (+) | 1383 | WP_012465835.1 | FAD-dependent oxidoreductase | - |
| CLIM_RS04420 (Clim_0878) | - | 961221..961682 (-) | 462 | WP_012465836.1 | hypothetical protein | - |
| CLIM_RS04425 (Clim_0879) | - | 961697..963985 (-) | 2289 | WP_012465837.1 | cation-translocating P-type ATPase | - |
Sequence
Protein
Download Length: 205 a.a. Molecular weight: 22368.83 Da Isoelectric Point: 6.6000
>NTDB_id=28446 CLIM_RS04400 WP_012465834.1 958851..959468(+) (recR) [Chlorobium limicola DSM 245]
MRYTSAAIETLIEEFAKLPGIGRKTAQRLAMHILHEPKSGAERLAGALIDIKEKVIRCSVCQNVTDRDADPCYICSSTGR
DRSVICVVESPADVLAFEKTGHYKGQYHVLHGLVSPLDGIGPDDIRIHELLARLGERHEAVPVKEVVLALNPTVEGETTS
LYITRLLKPFGISVTKIARGIPVGAELEFIDEATLSRAMEGRSAV
MRYTSAAIETLIEEFAKLPGIGRKTAQRLAMHILHEPKSGAERLAGALIDIKEKVIRCSVCQNVTDRDADPCYICSSTGR
DRSVICVVESPADVLAFEKTGHYKGQYHVLHGLVSPLDGIGPDDIRIHELLARLGERHEAVPVKEVVLALNPTVEGETTS
LYITRLLKPFGISVTKIARGIPVGAELEFIDEATLSRAMEGRSAV
Nucleotide
Download Length: 618 bp
>NTDB_id=28446 CLIM_RS04400 WP_012465834.1 958851..959468(+) (recR) [Chlorobium limicola DSM 245]
ATGCGTTATACTTCGGCGGCCATTGAAACCCTGATCGAAGAGTTTGCCAAACTGCCGGGTATAGGTCGTAAAACCGCTCA
GCGTCTTGCCATGCATATACTGCATGAACCGAAGTCAGGAGCCGAAAGGCTTGCCGGTGCGTTGATCGATATAAAAGAAA
AGGTTATCCGCTGTTCAGTCTGCCAGAACGTTACCGACCGCGATGCCGATCCCTGTTATATATGCAGCAGCACAGGCCGT
GACAGGTCTGTCATCTGTGTTGTCGAGTCGCCTGCAGACGTCCTGGCTTTTGAAAAAACCGGTCATTATAAAGGACAGTA
TCATGTGCTTCACGGCCTTGTCTCACCGCTTGACGGCATAGGACCTGACGACATCAGGATTCACGAGTTGCTTGCCAGAC
TCGGAGAGCGGCATGAAGCGGTTCCGGTAAAAGAGGTCGTGCTTGCTCTCAATCCTACAGTAGAGGGAGAGACAACCTCT
CTCTACATTACCAGGCTGCTTAAACCTTTTGGTATCTCCGTTACAAAGATTGCCCGGGGTATTCCGGTTGGTGCCGAGCT
CGAGTTTATTGACGAAGCAACGCTTTCCCGCGCTATGGAGGGTCGCTCAGCGGTGTAG
ATGCGTTATACTTCGGCGGCCATTGAAACCCTGATCGAAGAGTTTGCCAAACTGCCGGGTATAGGTCGTAAAACCGCTCA
GCGTCTTGCCATGCATATACTGCATGAACCGAAGTCAGGAGCCGAAAGGCTTGCCGGTGCGTTGATCGATATAAAAGAAA
AGGTTATCCGCTGTTCAGTCTGCCAGAACGTTACCGACCGCGATGCCGATCCCTGTTATATATGCAGCAGCACAGGCCGT
GACAGGTCTGTCATCTGTGTTGTCGAGTCGCCTGCAGACGTCCTGGCTTTTGAAAAAACCGGTCATTATAAAGGACAGTA
TCATGTGCTTCACGGCCTTGTCTCACCGCTTGACGGCATAGGACCTGACGACATCAGGATTCACGAGTTGCTTGCCAGAC
TCGGAGAGCGGCATGAAGCGGTTCCGGTAAAAGAGGTCGTGCTTGCTCTCAATCCTACAGTAGAGGGAGAGACAACCTCT
CTCTACATTACCAGGCTGCTTAAACCTTTTGGTATCTCCGTTACAAAGATTGCCCGGGGTATTCCGGTTGGTGCCGAGCT
CGAGTTTATTGACGAAGCAACGCTTTCCCGCGCTATGGAGGGTCGCTCAGCGGTGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recR | Bacillus subtilis subsp. subtilis str. 168 |
54.95 |
98.537 |
0.541 |
| recR | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.805 |
100 |
0.478 |
| recR | Streptococcus pneumoniae R6 |
46.939 |
95.61 |
0.449 |