Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EGX93_RS12085 Genome accession   NZ_CP033762
Coordinates   2280979..2281716 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_536     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275979..2286716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS12070 (EGX93_12060) clpC 2276433..2279006 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EGX93_RS12075 (EGX93_12065) yfiH 2279136..2279867 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  EGX93_RS12080 (EGX93_12070) rluD 2279864..2280844 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EGX93_RS12085 (EGX93_12075) comL 2280979..2281716 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EGX93_RS12090 (EGX93_12080) raiA 2281987..2282328 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EGX93_RS12095 (EGX93_12085) pheL 2282432..2282479 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EGX93_RS12100 (EGX93_12090) pheA 2282578..2283738 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  EGX93_RS12105 (EGX93_12095) tyrA 2283781..2284902 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EGX93_RS12110 (EGX93_12100) aroF 2284913..2285983 (-) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EGX93_RS12115 (EGX93_12105) yfiL 2286193..2286558 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=284422 EGX93_RS12085 WP_000197686.1 2280979..2281716(+) (comL) [Escherichia coli strain FDAARGOS_536]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=284422 EGX93_RS12085 WP_000197686.1 2280979..2281716(+) (comL) [Escherichia coli strain FDAARGOS_536]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment