Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   C9888_RS01755 Genome accession   NZ_CP028375
Coordinates   330997..331395 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus velezensis strain W1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 325997..336395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS01730 - 326169..327371 (+) 1203 WP_014416870.1 GTP-binding protein -
  C9888_RS01735 - 327436..328572 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  C9888_RS01740 - 328587..329021 (+) 435 WP_014416871.1 RDD family protein -
  C9888_RS01745 - 329093..329416 (+) 324 WP_007409357.1 YckD family protein -
  C9888_RS01750 - 329520..330956 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  C9888_RS01755 nin/comJ 330997..331395 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  C9888_RS01760 nucA/comI 331416..331853 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C9888_RS01765 hxlB 332184..332741 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  C9888_RS01770 hxlA 332738..333373 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  C9888_RS01775 - 333605..333967 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=284416 C9888_RS01755 WP_014416873.1 330997..331395(-) (nin/comJ) [Bacillus velezensis strain W1]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=284416 C9888_RS01755 WP_014416873.1 330997..331395(-) (nin/comJ) [Bacillus velezensis strain W1]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment