Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C9888_RS01760 Genome accession   NZ_CP028375
Coordinates   331416..331853 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain W1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326416..336853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS01735 - 327436..328572 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  C9888_RS01740 - 328587..329021 (+) 435 WP_014416871.1 RDD family protein -
  C9888_RS01745 - 329093..329416 (+) 324 WP_007409357.1 YckD family protein -
  C9888_RS01750 - 329520..330956 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  C9888_RS01755 nin/comJ 330997..331395 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  C9888_RS01760 nucA/comI 331416..331853 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C9888_RS01765 hxlB 332184..332741 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  C9888_RS01770 hxlA 332738..333373 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  C9888_RS01775 - 333605..333967 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=284417 C9888_RS01760 WP_003156588.1 331416..331853(-) (nucA/comI) [Bacillus velezensis strain W1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=284417 C9888_RS01760 WP_003156588.1 331416..331853(-) (nucA/comI) [Bacillus velezensis strain W1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment