Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | EGX93_RS11010 | Genome accession | NZ_CP033762 |
| Coordinates | 2038586..2039062 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain FDAARGOS_536 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2033586..2044062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX93_RS10985 (EGX93_10980) | istB | 2034053..2034799 (-) | 747 | WP_001016257.1 | IS21-like element ISEc12 family helper ATPase IstB | - |
| EGX93_RS10990 (EGX93_10985) | istA | 2034814..2036355 (-) | 1542 | WP_002431311.1 | IS21-like element ISEc12 family transposase | - |
| EGX93_RS10995 (EGX93_10990) | - | 2036545..2036850 (+) | 306 | Protein_1987 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EGX93_RS11000 (EGX93_10995) | - | 2037178..2037996 (+) | 819 | WP_123907576.1 | DUF932 domain-containing protein | - |
| EGX93_RS11005 (EGX93_11000) | - | 2038088..2038570 (+) | 483 | WP_123907577.1 | antirestriction protein | - |
| EGX93_RS11010 (EGX93_11005) | radC | 2038586..2039062 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| EGX93_RS11015 (EGX93_11010) | - | 2039125..2039346 (+) | 222 | WP_000691817.1 | DUF987 domain-containing protein | - |
| EGX93_RS25530 | - | 2039408..2039830 (+) | 423 | Protein_1992 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| EGX93_RS11030 (EGX93_11025) | dsdC | 2040030..2040965 (-) | 936 | WP_001331803.1 | DNA-binding transcriptional regulator DsdC | - |
| EGX93_RS11035 (EGX93_11030) | dsdX | 2041183..2042520 (+) | 1338 | WP_000556036.1 | D-serine transporter DsdX | - |
| EGX93_RS11040 (EGX93_11035) | dsdA | 2042538..2043866 (+) | 1329 | WP_000426395.1 | D-serine ammonia-lyase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=284417 EGX93_RS11010 WP_001186738.1 2038586..2039062(+) (radC) [Escherichia coli strain FDAARGOS_536]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=284417 EGX93_RS11010 WP_001186738.1 2038586..2039062(+) (radC) [Escherichia coli strain FDAARGOS_536]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |