Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   A17_RS03250 Genome accession   NZ_CP028372
Coordinates   592915..593565 (-) Length   216 a.a.
NCBI ID   WP_002923759.1    Uniprot ID   A0A5T0IQG5
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 587915..598565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS03215 (A17_00643) - 588281..589285 (+) 1005 WP_011049741.1 membrane protein -
  A17_RS03220 (A17_00644) tlyA 589282..590043 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  A17_RS03225 (A17_00645) ribF 590009..590863 (+) 855 WP_002873780.1 bifunctional riboflavin kinase/FAD synthetase -
  A17_RS03230 (A17_00646) cmoA 590850..591560 (+) 711 WP_072233193.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  A17_RS03235 (A17_00647) - 591550..591771 (-) 222 WP_002859102.1 EexN family lipoprotein -
  A17_RS03240 (A17_00648) - 591768..592214 (-) 447 WP_002875365.1 hypothetical protein -
  A17_RS03245 (A17_00649) - 592272..592904 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  A17_RS03250 (A17_00650) CJE0566 592915..593565 (-) 651 WP_002923759.1 DNA/RNA non-specific endonuclease Regulator
  A17_RS03255 (A17_00651) nth 593562..594188 (-) 627 WP_002852225.1 endonuclease III -
  A17_RS03260 (A17_00652) peb4 594269..595090 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  A17_RS03265 (A17_00653) fbaA 595090..596154 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  A17_RS03270 (A17_00654) - 596249..597691 (+) 1443 WP_002875368.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25532.25 Da        Isoelectric Point: 9.9028

>NTDB_id=284382 A17_RS03250 WP_002923759.1 592915..593565(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain huA17]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYNKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=284382 A17_RS03250 WP_002923759.1 592915..593565(-) (CJE0566) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACAATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0IQG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment