Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MAEO_RS05835 Genome accession   NC_009635
Coordinates   1209265..1210152 (-) Length   295 a.a.
NCBI ID   WP_011973861.1    Uniprot ID   A6UW57
Organism   Methanococcus aeolicus Nankai-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204265..1215152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAEO_RS05810 (Maeo_1147) - 1204289..1205515 (+) 1227 WP_011973856.1 ArsR family transcriptional regulator -
  MAEO_RS05815 (Maeo_1148) mptA 1205647..1206576 (+) 930 WP_011973857.1 GTP cyclohydrolase MptA -
  MAEO_RS05820 (Maeo_1149) - 1206754..1207998 (+) 1245 WP_011973858.1 ATP-grasp domain-containing protein -
  MAEO_RS05825 (Maeo_1150) tfe 1207958..1208509 (+) 552 WP_011973859.1 transcription factor E -
  MAEO_RS05830 (Maeo_1151) - 1208684..1209217 (+) 534 WP_269593223.1 TIGR00295 family protein -
  MAEO_RS05835 (Maeo_1152) epdJ 1209265..1210152 (-) 888 WP_011973861.1 type II secretion system F family protein Machinery gene
  MAEO_RS05840 (Maeo_1153) epdK 1210204..1211232 (-) 1029 WP_011973862.1 type II secretion system F family protein Machinery gene
  MAEO_RS05845 (Maeo_1154) epdL 1211245..1212879 (-) 1635 WP_011973863.1 CpaF family protein Machinery gene
  MAEO_RS05850 (Maeo_1155) - 1212916..1213920 (-) 1005 WP_011973864.1 transcription initiation factor IIB -
  MAEO_RS05860 (Maeo_1156) - 1214079..1214378 (-) 300 WP_011973865.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32532.70 Da        Isoelectric Point: 8.7176

>NTDB_id=28430 MAEO_RS05835 WP_011973861.1 1209265..1210152(-) (epdJ) [Methanococcus aeolicus Nankai-3]
MDLKQIYSYTISRNIFILRKSGIKTNAKLYIGLTIFGSIIIPLLFNHFMHLNIKTTFILFLVYLGVFLSIPSIIYEGKIE
KFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYSFEDAMTTITENSDSMVFRQIGRLII
ENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANGLVVGLVILCGVIPATAGLIGGYLTVLSTMSPNMPAPSPEQIAK
CYELIQLGTGIFGLLFSIPLFGLNLSRMIITCAICMTGGIVVFYGISMGSGFLFS

Nucleotide


Download         Length: 888 bp        

>NTDB_id=28430 MAEO_RS05835 WP_011973861.1 1209265..1210152(-) (epdJ) [Methanococcus aeolicus Nankai-3]
ATGGATTTAAAACAAATTTACAGCTACACCATATCCCGTAATATATTTATATTGAGAAAATCAGGGATTAAAACCAATGC
AAAATTATATATTGGATTAACCATTTTTGGTTCGATTATTATCCCACTATTATTTAATCATTTTATGCATTTAAATATTA
AAACTACATTTATATTGTTTTTAGTTTATCTGGGTGTTTTCCTAAGTATTCCTTCCATTATATATGAAGGAAAAATTGAA
AAGTTTGAAAAAAATATACCTAAGGCATTATATGTAATGACGCTATCGCTTGATTCTGGTCGTTCCGTCACAGAAGCTAT
TGAAGAAGTTATAAATGCAGGAGTTAATGGAGTAGACAAAGAATTTATGAAAATATTGTATTTAATTATAGAAAAAAAAT
ATAGTTTTGAAGATGCTATGACCACCATAACAGAAAATTCAGATTCTATGGTATTTAGACAGATTGGTAGGTTAATAATA
GAAAATAGGAAACAAGGCGGAGAGCTCGCTTCAACCCTTAGAACACTTGCAAAAACTCTTGAAGATTTAATGAATATTAA
ACAGCAATTATTAAGTACAACTGCAAATGGTCTTGTTGTTGGTTTAGTTATTTTATGTGGAGTTATTCCTGCCACAGCTG
GTTTAATTGGAGGATATTTAACAGTATTATCTACAATGTCACCAAATATGCCTGCTCCGAGTCCCGAGCAAATAGCAAAA
TGCTACGAATTAATACAGCTAGGAACTGGTATTTTTGGATTATTATTTTCCATTCCATTATTTGGATTAAATTTAAGTAG
AATGATTATTACCTGTGCCATATGTATGACTGGCGGGATTGTTGTGTTTTATGGTATTTCAATGGGTTCGGGATTTTTAT
TTTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(92-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

59.044

99.322

0.586

Multiple sequence alignment