Detailed information NTG0028432

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CLIM_RS02095
• Genome accession: NC_010803
• Coordinates: 448619..449518 (+)
• Length: 299 a.a.
• NCBI ID: WP_012465381.1
• Uniprot ID: -
• Organism: Chlorobium limicola DSM 245
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 443619..454518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLIM_RS02080 (Clim_0404)	thyX	444104..444757 (-)	654	WP_012465378.1	FAD-dependent thymidylate synthase	-
CLIM_RS02085 (Clim_0405)	clpP	445024..445701 (+)	678	WP_012465379.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
CLIM_RS02090 (Clim_0406)	-	445751..448465 (+)	2715	WP_012465380.1	valine--tRNA ligase	-
CLIM_RS02095 (Clim_0407)	rpoS	448619..449518 (+)	900	WP_012465381.1	RNA polymerase sigma factor RpoD/SigA	Regulator
CLIM_RS02100 (Clim_0408)	-	449554..450387 (-)	834	WP_012465382.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-
CLIM_RS02105 (Clim_0409)	-	450384..451466 (-)	1083	WP_012465383.1	LptF/LptG family permease	-
CLIM_RS02110 (Clim_0410)	-	451547..454486 (-)	2940	WP_012465384.1	pitrilysin family protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 34211.17 Da
• Isoelectric Point: 9.4807

>NTDB_id=28432 CLIM_RS02095 WP_012465381.1 448619..449518(+) (rpoS) [Chlorobium limicola DSM 245]
MRQLKISKQITNRESLSLDRYLQEIGKYDLLTADDEVKLTMAIKEGYDMPVDTVEYKRAKRALDKLIKGNLRFVVSVAKQ
YQNQGLTLGDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGTLNKISKAYSQLEQE
FERDPNTRELANLLDMDSQDVADTLKIAGRHVSVDAPFAQGDDNRLLDVLQNDGHLPDHGLNKDSLTLEVERSLSVLAPR
EADVIRSYFGIGMDNPLTLEEIGEKFKLTRERVRQIKEKAIRRLRQSAYSKVLKEYIGS

Nucleotide

• Length: 900 bp

>NTDB_id=28432 CLIM_RS02095 WP_012465381.1 448619..449518(+) (rpoS) [Chlorobium limicola DSM 245]
ATGAGGCAGTTGAAAATAAGCAAGCAGATCACCAACAGGGAGAGCCTTTCGCTTGACCGTTATCTTCAGGAAATCGGAAA
ATACGATCTTCTGACCGCTGATGATGAGGTCAAGCTGACCATGGCTATCAAAGAGGGCTACGATATGCCCGTTGACACCG
TCGAGTACAAACGGGCAAAACGGGCGCTGGACAAGCTCATAAAAGGAAACCTGCGATTTGTGGTTTCCGTGGCCAAACAG
TACCAGAATCAGGGTCTGACCCTTGGCGATCTGATCAACGAGGGTAATCTCGGACTGATCAAGGCTGCCAAGAGATTCGA
CGAAACAAGAGGTTTCAAGTTCATCTCCTATGCGGTCTGGTGGATTCGCCAGTCCATTCTTCAGGCGCTTGCGGAGCAGT
CCCGAATCGTGCGGCTTCCACTGAACCGGGTTGGAACACTCAACAAGATCAGCAAGGCGTACAGTCAGCTTGAGCAGGAG
TTCGAGCGGGATCCGAACACTCGTGAACTGGCGAACCTTCTCGATATGGACTCCCAGGATGTCGCCGATACCCTGAAAAT
CGCCGGACGCCACGTATCGGTTGATGCGCCTTTTGCCCAGGGTGACGATAACCGGTTACTCGATGTGCTGCAGAATGATG
GTCATCTGCCGGATCACGGTTTGAACAAGGACTCGCTGACTCTTGAGGTTGAACGTTCGCTTTCGGTGCTTGCTCCGCGT
GAAGCCGATGTCATCCGCTCATATTTCGGTATAGGCATGGACAATCCCCTGACTCTTGAAGAGATCGGCGAAAAGTTCAA
GCTTACGCGCGAGCGTGTCCGGCAGATCAAGGAAAAAGCCATAAGAAGGCTTCGCCAGTCAGCTTACAGCAAGGTTCTCA
AGGAGTATATCGGCAGCTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (146-219)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (17-46)

• Sigma-70, region 4 (Sigma70_r4) (234-286)

• Sigma-70 region 2 (Sigma70_r2) (66-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.449	89.298	0.361