Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   MAEO_RS03225 Genome accession   NC_009635
Coordinates   665263..665481 (-) Length   72 a.a.
NCBI ID   WP_011973364.1    Uniprot ID   -
Organism   Methanococcus aeolicus Nankai-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 660263..670481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAEO_RS03200 (Maeo_0643) - 661068..662123 (+) 1056 WP_011973359.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  MAEO_RS03205 (Maeo_0644) - 662150..662515 (+) 366 WP_011973360.1 dihydroneopterin aldolase family protein -
  MAEO_RS03210 (Maeo_0645) - 662482..662997 (-) 516 WP_011973361.1 hypothetical protein -
  MAEO_RS03215 (Maeo_0646) - 663150..665000 (-) 1851 WP_011973362.1 DUF6541 family protein -
  MAEO_RS03220 (Maeo_0647) - 665011..665229 (-) 219 WP_011973363.1 class III signal peptide-containing protein -
  MAEO_RS03225 (Maeo_0648) MMJJ_RS05685 665263..665481 (-) 219 WP_011973364.1 class III signal peptide-containing protein Machinery gene
  MAEO_RS03230 (Maeo_0649) - 665821..667506 (-) 1686 WP_011973365.1 S-layer protein -
  MAEO_RS03235 (Maeo_0650) - 667790..668335 (-) 546 WP_011973366.1 acylphosphatase -
  MAEO_RS03240 (Maeo_0651) - 668455..670233 (-) 1779 WP_011973367.1 ribosome biogenesis/translation initiation ATPase RLI -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 7326.45 Da        Isoelectric Point: 10.2739

>NTDB_id=28426 MAEO_RS03225 WP_011973364.1 665263..665481(-) (MMJJ_RS05685) [Methanococcus aeolicus Nankai-3]
MKLLKKLTSKKGQVSMEIGILVAAAVAVAAIAAYYYVSNVKSSAANSGAAAQTSSSKLANVATNYTDSLSNL

Nucleotide


Download         Length: 219 bp        

>NTDB_id=28426 MAEO_RS03225 WP_011973364.1 665263..665481(-) (MMJJ_RS05685) [Methanococcus aeolicus Nankai-3]
ATGAAATTGTTAAAAAAATTAACCTCCAAAAAAGGACAGGTTTCAATGGAAATAGGTATCTTAGTGGCAGCAGCAGTTGC
AGTTGCAGCTATTGCAGCATATTACTATGTATCTAATGTTAAAAGTAGTGCAGCCAACTCAGGAGCTGCAGCACAAACAT
CATCCTCTAAATTAGCAAATGTAGCTACAAACTATACCGATAGTCTTAGTAATCTATAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

62.5

100

0.625
  epdE Methanococcus maripaludis strain DSM 2067

50

97.222

0.486

Multiple sequence alignment