Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   C7Y67_RS02765 Genome accession   NZ_CP028342
Coordinates   538357..538971 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate R13     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 533357..543971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS02755 (C7Y67_02755) aceF 534647..536533 (+) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  C7Y67_RS02760 (C7Y67_02760) lpdA 536802..538229 (+) 1428 WP_108744758.1 dihydrolipoyl dehydrogenase -
  C7Y67_RS02765 (C7Y67_02765) opaR 538357..538971 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  C7Y67_RS02770 (C7Y67_02770) hpt 539290..539820 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  C7Y67_RS02775 (C7Y67_02775) can 539894..540562 (-) 669 WP_005462578.1 carbonate dehydratase -
  C7Y67_RS02780 (C7Y67_02780) - 540846..542516 (+) 1671 WP_005479694.1 SulP family inorganic anion transporter -
  C7Y67_RS02790 (C7Y67_02790) - 542769..543686 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=284257 C7Y67_RS02765 WP_005479697.1 538357..538971(-) (opaR) [Vibrio parahaemolyticus isolate R13]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=284257 C7Y67_RS02765 WP_005479697.1 538357..538971(-) (opaR) [Vibrio parahaemolyticus isolate R13]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment