Detailed information NTG0284254

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C7Y67_RS02715
• Genome accession: NZ_CP028342
• Coordinates: 524616..525485 (-)
• Length: 289 a.a.
• NCBI ID: WP_057619578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus isolate R13
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 519616..530485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7Y67_RS02680 (C7Y67_02680)	rpsP	520657..520905 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
C7Y67_RS02685 (C7Y67_02685)	rimM	520934..521482 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
C7Y67_RS02690 (C7Y67_02690)	trmD	521510..522253 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
C7Y67_RS02695 (C7Y67_02695)	rplS	522295..522648 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
C7Y67_RS02700 (C7Y67_02700)	yacG	522970..523164 (-)	195	WP_031845920.1	DNA gyrase inhibitor YacG	-
C7Y67_RS02705 (C7Y67_02705)	zapD	523233..523973 (-)	741	WP_015297254.1	cell division protein ZapD	-
C7Y67_RS02710 (C7Y67_02710)	coaE	524001..524615 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
C7Y67_RS02715 (C7Y67_02715)	pilD	524616..525485 (-)	870	WP_057619578.1	A24 family peptidase	Machinery gene
C7Y67_RS02720 (C7Y67_02720)	pilC	525550..526773 (-)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
C7Y67_RS02725 (C7Y67_02725)	pilB	526798..528483 (-)	1686	WP_057619577.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C7Y67_RS02730 (C7Y67_02730)	-	528489..528947 (-)	459	WP_025547614.1	pilin	-
C7Y67_RS02735 (C7Y67_02735)	nadC	529211..530098 (-)	888	WP_025547616.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32421.44 Da
• Isoelectric Point: 6.4652

>NTDB_id=284254 C7Y67_RS02715 WP_057619578.1 524616..525485(-) (pilD) [Vibrio parahaemolyticus isolate R13]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSEPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSIVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=284254 C7Y67_RS02715 WP_057619578.1 524616..525485(-) (pilD) [Vibrio parahaemolyticus isolate R13]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAGGTTTTGACATTAAGCGAGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCATCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCGATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446