Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   EGV94_RS13235 Genome accession   NZ_CP033685
Coordinates   2725986..2726630 (+) Length   214 a.a.
NCBI ID   WP_123903211.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H26023     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2720986..2731630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGV94_RS13215 (EGV94_13180) - 2721620..2722834 (+) 1215 WP_003130955.1 MFS transporter -
  EGV94_RS13220 (EGV94_13185) - 2722850..2723878 (-) 1029 WP_003138966.1 AraC family transcriptional regulator -
  EGV94_RS13225 (EGV94_13190) pqsH 2724496..2725644 (+) 1149 WP_003119987.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  EGV94_RS13235 (EGV94_13200) letA 2725986..2726630 (+) 645 WP_123903211.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  EGV94_RS13240 (EGV94_13205) uvrC 2726631..2728457 (+) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  EGV94_RS13245 (EGV94_13210) pgsA 2728491..2729051 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EGV94_RS13255 (EGV94_13220) - 2729934..2730794 (-) 861 WP_226341673.1 fimbrial protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23566.45 Da        Isoelectric Point: 6.1073

>NTDB_id=284233 EGV94_RS13235 WP_123903211.1 2725986..2726630(+) (letA) [Pseudomonas aeruginosa strain H26023]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMGQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=284233 EGV94_RS13235 WP_123903211.1 2725986..2726630(+) (letA) [Pseudomonas aeruginosa strain H26023]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGGCCAGGCTATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537

Multiple sequence alignment