Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C8077_RS00540 Genome accession   NZ_CP028341
Coordinates   135350..137101 (+) Length   583 a.a.
NCBI ID   WP_085347218.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain 1-11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 130350..142101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8077_RS00515 (C8077_00515) - 131059..131973 (-) 915 WP_011742635.1 thiazole synthase -
  C8077_RS00520 (C8077_00520) thiF 132130..132843 (-) 714 WP_107645954.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  C8077_RS00525 (C8077_00525) thiS 132896..133090 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  C8077_RS00530 (C8077_00530) - 133526..134548 (+) 1023 WP_195525311.1 aldo/keto reductase -
  C8077_RS00535 (C8077_00535) - 134732..135223 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  C8077_RS00540 (C8077_00540) rcrP 135350..137101 (+) 1752 WP_085347218.1 ABC transporter ATP-binding protein Regulator
  C8077_RS00545 (C8077_00545) rcrQ 137112..138953 (+) 1842 WP_055054905.1 ABC transporter ATP-binding protein Regulator
  C8077_RS00550 (C8077_00550) - 139124..140104 (+) 981 WP_011742640.1 aldo/keto reductase -
  C8077_RS00555 (C8077_00555) - 140189..141241 (-) 1053 WP_041777206.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64487.57 Da        Isoelectric Point: 5.4434

>NTDB_id=284233 C8077_RS00540 WP_085347218.1 135350..137101(+) (rcrP) [Bifidobacterium adolescentis strain 1-11]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMHDIWVAGGKMLLVSLGSAACAVVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAAEAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=284233 C8077_RS00540 WP_085347218.1 135350..137101(+) (rcrP) [Bifidobacterium adolescentis strain 1-11]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
TTGGCTTGACCTGACCCTGCCGGACTACATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCACGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCCGTCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTTGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGAAGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-503)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.419

100

0.516

Multiple sequence alignment