Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Tharo_RS07805 Genome accession   NZ_CP028339
Coordinates   1650009..1651355 (+) Length   448 a.a.
NCBI ID   WP_245881029.1    Uniprot ID   -
Organism   Thauera aromatica K172     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645009..1656355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tharo_RS07780 (Tharo_1540) tnpB 1646341..1646700 (-) 360 WP_107219750.1 IS66 family insertion sequence element accessory protein TnpB -
  Tharo_RS07785 (Tharo_1541) - 1646700..1647005 (-) 306 WP_107219751.1 hypothetical protein -
  Tharo_RS07790 - 1647004..1647729 (+) 726 WP_107220710.1 DUF4145 domain-containing protein -
  Tharo_RS07795 (Tharo_1542) - 1648145..1648381 (+) 237 WP_107220711.1 PP0621 family protein -
  Tharo_RS07800 (Tharo_1543) - 1648390..1650012 (+) 1623 WP_107220712.1 PAS domain-containing sensor histidine kinase -
  Tharo_RS07805 (Tharo_1544) pilR 1650009..1651355 (+) 1347 WP_245881029.1 sigma-54 dependent transcriptional regulator Regulator
  Tharo_RS17925 - 1651318..1651428 (+) 111 WP_245881030.1 helix-turn-helix domain-containing protein -
  Tharo_RS07810 (Tharo_1545) - 1651439..1652050 (-) 612 WP_159051673.1 hypothetical protein -
  Tharo_RS07815 (Tharo_1546) - 1652133..1653248 (-) 1116 WP_107220714.1 hypothetical protein -
  Tharo_RS07820 (Tharo_1547) - 1653365..1653685 (-) 321 WP_107220715.1 metal-sulfur cluster assembly factor -
  Tharo_RS07825 (Tharo_1548) argB 1653842..1654744 (+) 903 WP_107220716.1 acetylglutamate kinase -
  Tharo_RS07830 (Tharo_1549) - 1654779..1655030 (-) 252 WP_245881031.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 48697.76 Da        Isoelectric Point: 6.2606

>NTDB_id=284223 Tharo_RS07805 WP_245881029.1 1650009..1651355(+) (pilR) [Thauera aromatica K172]
MNTVERRNRPRTVDVLVVDDEEDIRELLELSLLRMGLGCDTAGSLQEARALLEARRYRLCLTDMRLPDGDGLSLVEYIQA
RHAGLPVAVISAFGSIEAAIRALKLGAFDFVTKPVELKALRELVHHALSLRPEPAAAPAGDARMLVGDSPALAQLRGQAE
KLARNQAPVFIYGESGTGKEVVARFIHRLGPRAGGPFVPVNCGAISPELMESEFFGYRKGSFTGAATDKEGLFQAARSGT
LFLDEIGELPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHQDLGRLVAEGRFRQDLFFRINVIALRVPPLRERR
EDIPALAAHILARLAEREGRAPRQLSAAALQVLLEHPFPGNVRELENLLERACALCEGERIDATDIELHPGASMSGWLTD
SAFGFNPAATWVDPARFERAAGAEGREGEYPPGAGARGPRPRAGALEP

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=284223 Tharo_RS07805 WP_245881029.1 1650009..1651355(+) (pilR) [Thauera aromatica K172]
ATGAACACCGTCGAACGCCGTAACCGCCCGCGTACCGTCGACGTCCTCGTCGTCGATGACGAGGAGGACATCCGCGAGTT
GCTCGAACTGTCCCTGCTGCGGATGGGCCTGGGGTGCGACACCGCGGGCTCGCTGCAGGAGGCGCGCGCCTTGCTCGAGG
CGCGGCGCTATCGCCTGTGCCTGACCGACATGCGCCTGCCCGACGGCGACGGCCTGAGCCTGGTCGAATACATCCAGGCC
CGCCATGCCGGCCTGCCGGTGGCGGTGATCAGCGCCTTCGGCAGCATCGAAGCGGCGATCCGCGCGCTCAAGCTCGGTGC
CTTTGATTTCGTCACCAAGCCGGTCGAACTCAAGGCCTTGCGCGAACTCGTGCACCATGCGCTGAGCCTGCGCCCCGAGC
CCGCCGCAGCGCCGGCCGGCGATGCGCGGATGCTGGTCGGCGACTCGCCCGCCCTCGCCCAGCTGCGCGGCCAGGCCGAG
AAGCTGGCGCGCAACCAGGCGCCGGTGTTCATCTACGGCGAGTCGGGTACCGGCAAGGAGGTGGTCGCCCGCTTCATCCA
CCGCCTCGGGCCGCGCGCGGGCGGGCCTTTCGTCCCGGTCAACTGCGGCGCGATCTCCCCGGAGCTGATGGAGAGCGAAT
TCTTCGGCTACCGCAAGGGCAGCTTCACCGGCGCCGCAACCGACAAGGAAGGCCTGTTCCAGGCCGCCCGCAGCGGCACC
CTGTTCCTCGACGAAATCGGCGAGCTGCCGTTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGCGCGGTGCG
CCCGGTGGGCGCGCATGCCGAGGAGCCGGTCGATGTCCGCATCCTCTCCGCGTCGCACCAGGACCTGGGACGGCTGGTGG
CCGAGGGGCGCTTCCGCCAGGACCTCTTCTTCCGCATCAACGTCATCGCCCTGCGCGTGCCGCCGCTGCGCGAACGGCGC
GAGGATATCCCCGCGCTGGCAGCGCACATTCTTGCCCGCCTCGCCGAGCGCGAGGGGCGGGCGCCGCGGCAACTGTCCGC
GGCGGCGCTGCAGGTGCTGCTCGAGCACCCTTTCCCGGGCAATGTGCGCGAGCTGGAAAACCTGCTCGAGCGCGCCTGCG
CGCTGTGCGAGGGCGAGCGCATCGACGCCACTGATATCGAGCTCCATCCGGGGGCGAGCATGTCGGGCTGGCTCACCGAC
AGCGCTTTCGGCTTCAATCCGGCGGCCACCTGGGTCGATCCGGCGCGCTTCGAGCGCGCCGCCGGGGCCGAGGGACGGGA
AGGGGAATACCCCCCAGGAGCAGGTGCGCGTGGTCCGCGTCCTCGAGCAGGCGCGCTGGAACCATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Response regulator receiver domain (Response_reg)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.281

85.714

0.542
  pilR Acinetobacter baumannii strain A118

51.979

84.598

0.44

Multiple sequence alignment