Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MEVAN_RS05305 Genome accession   NC_009634
Coordinates   1055442..1056338 (-) Length   298 a.a.
NCBI ID   WP_012065867.1    Uniprot ID   A6UR16
Organism   Methanococcus vannielii SB     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050442..1061338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEVAN_RS05280 (Mevan_1030) - 1050962..1052188 (+) 1227 WP_012065862.1 AAA family ATPase -
  MEVAN_RS05285 (Mevan_1031) mptA 1052205..1053143 (+) 939 WP_012065863.1 GTP cyclohydrolase MptA -
  MEVAN_RS05290 (Mevan_1032) - 1053179..1054240 (+) 1062 WP_012065864.1 ATP-grasp domain-containing protein -
  MEVAN_RS05295 (Mevan_1033) tfe 1054287..1054844 (+) 558 WP_012065865.1 transcription factor E -
  MEVAN_RS05300 (Mevan_1034) - 1054897..1055439 (+) 543 WP_048059243.1 HDIG domain-containing metalloprotein -
  MEVAN_RS05305 (Mevan_1035) epdJ 1055442..1056338 (-) 897 WP_012065867.1 type II secretion system F family protein Machinery gene
  MEVAN_RS05310 (Mevan_1036) epdK 1056343..1057398 (-) 1056 WP_012065868.1 type II secretion system F family protein Machinery gene
  MEVAN_RS05315 (Mevan_1037) epdL 1057410..1059071 (-) 1662 WP_012065869.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MEVAN_RS05320 (Mevan_1038) - 1059088..1060107 (-) 1020 WP_012065870.1 transcription initiation factor IIB -
  MEVAN_RS05325 (Mevan_1039) - 1060126..1060395 (-) 270 WP_012065871.1 H/ACA RNA-protein complex protein Gar1 -
  MEVAN_RS08910 (Mevan_1040) - 1060882..1061214 (+) 333 Protein_1055 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32692.26 Da        Isoelectric Point: 9.8856

>NTDB_id=28414 MEVAN_RS05305 WP_012065867.1 1055442..1056338(-) (epdJ) [Methanococcus vannielii SB]
MDMSASISRIYNYLIKRNLRILKKTGKNVDERIFIGLIFVVLVLPILLRIIIGFTLQTTIILTLVYLGSVLAIPSIMYES
KMEKFDSNLPKALYVMVLSLDSGRSIVEAINEVIRSGIPEVDSVFSKIVLLMTEKKLSFEDSMMLVSNSLDSKLFRQISR
LIIENRKYGGELANTLKKLAKTLEDLQNLKSQLISVTGNGLAVGLVILCGVIPATAGLIGGYLTVISQLAPTMPSVEPNQ
ISKAIETVQMGSGLFGLLFSVPLFGLKINKMIITCALCMSFAITAFYGVLRLTGLLFA

Nucleotide


Download         Length: 897 bp        

>NTDB_id=28414 MEVAN_RS05305 WP_012065867.1 1055442..1056338(-) (epdJ) [Methanococcus vannielii SB]
ATGGATATGTCTGCATCAATATCCAGAATTTATAATTATTTAATTAAAAGAAACCTACGGATACTTAAAAAAACCGGTAA
AAATGTAGATGAAAGAATATTTATTGGATTAATTTTTGTAGTACTGGTTTTACCAATATTACTTAGGATAATAATTGGTT
TTACACTACAAACTACCATCATATTAACTCTTGTTTATTTAGGGAGTGTACTTGCAATTCCAAGTATAATGTATGAGTCA
AAAATGGAAAAGTTTGATAGCAACCTTCCAAAAGCACTTTATGTAATGGTTCTATCATTGGATTCAGGTAGGTCAATTGT
TGAAGCAATTAATGAAGTTATACGAAGTGGAATTCCTGAAGTAGATTCTGTATTTTCAAAAATAGTGCTGTTAATGACTG
AAAAAAAGCTTAGTTTTGAAGATTCGATGATGCTTGTATCAAATTCACTTGATTCAAAACTTTTTAGACAAATTAGCAGG
TTGATAATTGAAAATAGAAAATACGGCGGAGAACTTGCAAATACGTTAAAAAAGCTCGCTAAAACATTAGAGGATCTCCA
AAATTTAAAATCACAGCTTATCAGCGTTACTGGAAACGGACTTGCAGTCGGCCTTGTAATATTATGTGGCGTAATTCCTG
CAACTGCAGGATTAATTGGAGGATATTTAACAGTTATATCCCAATTAGCACCAACAATGCCATCAGTAGAACCGAACCAA
ATTTCAAAAGCCATTGAAACCGTTCAAATGGGTTCTGGACTTTTTGGACTGTTATTTTCTGTTCCATTATTTGGATTAAA
AATCAATAAAATGATTATAACTTGCGCTCTATGTATGTCTTTTGCAATTACTGCATTTTATGGAGTTTTAAGACTTACTG
GACTACTGTTCGCCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(94-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UR16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

79.53

100

0.795

Multiple sequence alignment