Detailed information NTG0284139

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CEP77_RS05315
• Genome accession: NZ_CP028325
• Coordinates: 1088110..1089090 (+)
• Length: 326 a.a.
• NCBI ID: WP_108169557.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain FDAARGOS_298
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1083110..1094090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEP77_RS05285 (CEP77_05280)	panD	1084531..1084884 (+)	354	WP_000142226.1	aspartate 1-decarboxylase	-
CEP77_RS05290 (CEP77_05285)	-	1084887..1085189 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
CEP77_RS05295 (CEP77_05290)	-	1085189..1086184 (+)	996	WP_108169555.1	PDZ domain-containing protein	-
CEP77_RS05300 (CEP77_05295)	comB6	1086192..1087247 (+)	1056	WP_108169556.1	P-type conjugative transfer protein TrbL	Machinery gene
CEP77_RS05305 (CEP77_05300)	comB7	1087263..1087376 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
CEP77_RS05310 (CEP77_05305)	comB8	1087373..1088110 (+)	738	WP_000660523.1	virB8 family protein	Machinery gene
CEP77_RS05315 (CEP77_05310)	comB9	1088110..1089090 (+)	981	WP_108169557.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CEP77_RS05320 (CEP77_05315)	comB10	1089083..1090219 (+)	1137	WP_108169558.1	DNA type IV secretion system protein ComB10	Machinery gene
CEP77_RS05325 (CEP77_05320)	-	1090290..1091702 (+)	1413	WP_108169559.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CEP77_RS05330 (CEP77_05325)	gmd	1091744..1092889 (+)	1146	WP_108169560.1	GDP-mannose 4,6-dehydratase	-
CEP77_RS05335 (CEP77_05330)	-	1092882..1093814 (+)	933	WP_108169561.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37578.32 Da
• Isoelectric Point: 9.4540

>NTDB_id=284139 CEP77_RS05315 WP_108169557.1 1088110..1089090(+) (comB9) [Helicobacter pylori strain FDAARGOS_298]
MRKVLYALMGLLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTLENTPTNNKPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGI
CSKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFV
KKGKDE

Nucleotide

• Length: 981 bp

>NTDB_id=284139 CEP77_RS05315 WP_108169557.1 1088110..1089090(+) (comB9) [Helicobacter pylori strain FDAARGOS_298]
ATGCGTAAGGTTTTATACGCTCTCATGGGCCTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATACCCTTGAAAATACCCTTGAAAATACCCCCACAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACGCCA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATT
TGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGG
GCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTGTC
AAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterProScan.

• Conjugal transfer protein (CagX) (62-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	96.626	100	0.966