Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   CEP77_RS05310 Genome accession   NZ_CP028325
Coordinates   1087373..1088110 (+) Length   245 a.a.
NCBI ID   WP_000660523.1    Uniprot ID   A0AAD1D9W4
Organism   Helicobacter pylori strain FDAARGOS_298     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1082373..1093110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP77_RS05285 (CEP77_05280) panD 1084531..1084884 (+) 354 WP_000142226.1 aspartate 1-decarboxylase -
  CEP77_RS05290 (CEP77_05285) - 1084887..1085189 (+) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  CEP77_RS05295 (CEP77_05290) - 1085189..1086184 (+) 996 WP_108169555.1 PDZ domain-containing protein -
  CEP77_RS05300 (CEP77_05295) comB6 1086192..1087247 (+) 1056 WP_108169556.1 P-type conjugative transfer protein TrbL Machinery gene
  CEP77_RS05305 (CEP77_05300) comB7 1087263..1087376 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  CEP77_RS05310 (CEP77_05305) comB8 1087373..1088110 (+) 738 WP_000660523.1 virB8 family protein Machinery gene
  CEP77_RS05315 (CEP77_05310) comB9 1088110..1089090 (+) 981 WP_108169557.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  CEP77_RS05320 (CEP77_05315) comB10 1089083..1090219 (+) 1137 WP_108169558.1 DNA type IV secretion system protein ComB10 Machinery gene
  CEP77_RS05325 (CEP77_05320) - 1090290..1091702 (+) 1413 WP_108169559.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  CEP77_RS05330 (CEP77_05325) gmd 1091744..1092889 (+) 1146 WP_108169560.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28530.74 Da        Isoelectric Point: 8.9546

>NTDB_id=284138 CEP77_RS05310 WP_000660523.1 1087373..1088110(+) (comB8) [Helicobacter pylori strain FDAARGOS_298]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=284138 CEP77_RS05310 WP_000660523.1 1087373..1088110(+) (comB8) [Helicobacter pylori strain FDAARGOS_298]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAGAGAAACCGATTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.976

Multiple sequence alignment