Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CEP77_RS03075 Genome accession   NZ_CP028325
Coordinates   629540..629944 (-) Length   134 a.a.
NCBI ID   WP_108169257.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 624540..634944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP77_RS03050 (CEP77_03045) recJ 625084..626634 (+) 1551 WP_108169252.1 single-stranded-DNA-specific exonuclease RecJ -
  CEP77_RS03055 (CEP77_03050) - 626634..627515 (+) 882 WP_108169253.1 RluA family pseudouridine synthase -
  CEP77_RS03060 (CEP77_03055) - 627618..628178 (-) 561 WP_108169254.1 hypothetical protein -
  CEP77_RS03065 (CEP77_03060) - 628162..628500 (-) 339 WP_108169255.1 hypothetical protein -
  CEP77_RS03070 (CEP77_03065) - 628628..629410 (-) 783 WP_108169256.1 tetratricopeptide repeat protein -
  CEP77_RS03075 (CEP77_03070) dprB 629540..629944 (-) 405 WP_108169257.1 Holliday junction resolvase RuvX Machinery gene
  CEP77_RS03080 (CEP77_03075) dprA 629941..630741 (-) 801 WP_108169258.1 DNA-processing protein DprA Machinery gene
  CEP77_RS03085 (CEP77_03080) minE 630753..630986 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  CEP77_RS03090 (CEP77_03085) minD 630983..631789 (-) 807 WP_108169259.1 septum site-determining protein MinD -
  CEP77_RS03095 (CEP77_03090) ilvC 631813..632805 (-) 993 WP_108169260.1 ketol-acid reductoisomerase -
  CEP77_RS03105 (CEP77_03100) - 633054..633836 (+) 783 WP_108169261.1 NAD+ synthase -
  CEP77_RS03110 (CEP77_03105) - 633833..634771 (+) 939 WP_108169262.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15283.76 Da        Isoelectric Point: 8.7247

>NTDB_id=284124 CEP77_RS03075 WP_108169257.1 629540..629944(-) (dprB) [Helicobacter pylori strain FDAARGOS_298]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=284124 CEP77_RS03075 WP_108169257.1 629540..629944(-) (dprB) [Helicobacter pylori strain FDAARGOS_298]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment